Co-expression analysis

Gene ID	Zm.250.1.S1_at
Gene name	basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097
Homology with Arabidopsis	Similar to At3g06000: leucine-rich repeat family protein (HF=5e+0)
Module size	6 genes
NF	0.62
%ile	83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.98	Zm.250.1.S1_at	CF007330	basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097	-	5e+0	At3g06000	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.4323.1.S1_at	AY110219.1	-	-	2e+0	At1g49150	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.8514.1.S1_at	AY104758.1	-	-	5e+0	At5g35525	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.0	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.44141.1.S1_at, orthologous to the query gene, Zm.250.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	GmaAffx.44141.1.S1_at	At3g06000	-	-	1e-15	At2g21410	VHA-A2 (VACUOLAR PROTON ATPASE A2)	O.I.	H.G.	S.X.	Please select
0.58	78.8	Gma.7498.2.S1_at	At3g06000	-	-	3e-7	At1g25490	RCN1 (ROOTS CURL IN NPA)	O.I.	H.G.	S.X.	Please select
0.58	78.8	Gma.9706.3.S1_x_at	At3g06000	-	-	2e-5	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select
0.58	78.8	GmaAffx.66558.1.S1_at	At3g06000	-	-	4e-44	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	O.I.	H.G.	S.X.	Please select
0.58	78.8	GmaAffx.77127.1.S1_at	At3g06000	-	-	7e-8	At4g10590	ubiquitin carboxyl-terminal hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	GmaAffx.27586.2.S1_at	At3g06000	-	-	4e-27	At4g28470	RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B)	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.86770.1.S1_at	At3g06000	-	-	5e-15	At1g45000	26S proteasome regulatory complex subunit p42D, putative	O.I.	H.G.	S.X.	Please select
0.48	67.7	GmaAffx.82438.1.S1_at	At3g06000	-	-	2e-11	At5g60980	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.11321.3.S1_a_at	At3g06000	-	-	4e-49	At1g20260	hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.4229.1.S1_at	At3g06000	heat shock protein 70-related protein	-	1e-4	At1g79930	HSP91	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.82170.2.S1_at	At3g06000	-	-	4e-56	At1g10730	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.3977.2.S1_a_at	At3g06000	-	-	7e-14	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.47629.1.S1_at	At3g06000	-	-	2e-67	At1g79940	ATERDJ2A	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.15960.1.S1_at	At3g06000	-	-	3e-22	At4g01320	ATSTE24	O.I.	H.G.	S.X.	Please select
0.45	63.9	GmaAffx.75701.1.S1_at	At3g06000	-	-	6e-14	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.76522.1.S1_at	At3g06000	-	-	3e-10	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.52015.1.S1_at	At3g06000	-	-	5e-39	At3g20630	UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14)	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.91112.1.S1_s_at	At3g06000	ABC transporter-like protein	-	5e-28	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.8075.2.S1_s_at	At3g06000	-	-	1e+0	At4g38090	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.4816.1.S1_at	At3g06000	-	-	2e-17	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.82721.1.S1_at	At3g06000	-	-	6e-67	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.7498.3.S1_at	At3g06000	-	-	4e-71	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.2892.2.S1_a_at	At3g06000	-	-	5e-47	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.87706.1.S1_at	At3g06000	-	-	3e-45	At4g33090	APM1 (AMINOPEPTIDASE M1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.34837.1.S1_s_at	At3g06000	-	-	1e-4	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.48770.1.S1_at	At3g06000	-	-	5e-50	At1g18070	EF-1-alpha-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.93138.1.S1_s_at	At3g06000	-	-	2e-27	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.87490.1.S1_at	At3g06000	-	-	1e+0	At3g23635	RTFL13 (ROTUNDIFOLIA LIKE 13)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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