Co-expression analysis

Gene ID Zm.250.1.S1_at
Gene name basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097
Homology with ArabidopsisSimilar to At3g06000: leucine-rich repeat family protein (HF=5e+0)
Module size 6 genes
NF 0.62
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.98Zm.250.1.S1_atCF007330basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097-5e+0At3g06000leucine-rich repeat family proteinO.I.H.G.S.X.
0.6785.80.98Zm.16462.1.A1_atAY347711.1Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase-7e+0At5g57685AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)O.I.H.G.S.X.
0.6077.80.98Zm.4323.1.S1_atAY110219.1--2e+0At1g49150unknown proteinO.I.H.G.S.X.
0.6077.80.98Zm.8514.1.S1_atAY104758.1--5e+0At5g35525unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.6103.3.S1_atAI668289--8e-1At1g21010unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.6916.1.S1_atAW067358hypothetical protein LOC100273981-9e-13At5g66750CHR1 (CHROMATIN REMODELING 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.598.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM205367Mo17xB73 13 DAP endosperm tissue biological replicate 1GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO
7.097.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g06000, orthologous to the query gene, Zm.250.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.7788.0At3g06000819771leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFO.I.H.G.S.X.
0.7788.0At1g06225837132CLE3 (CLAVATA3/ESR-RELATED 3)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.O.I.H.G.S.X.
0.7486.1At1g70040843341unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6982.9At4g22030828292F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.6982.9At1g47790841193F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.6982.9At1g77830844118zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFO.I.H.G.S.X.
0.6882.2At3g62350825408-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.6680.1At1g11810837729F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.6680.1At3g59610825130F-box family protein / jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.6478.9At3g14480820671glycine/proline-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVAO.I.H.G.S.X.
0.6378.1At3g24060821991self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6176.7At3g26940822312CDG1 (CONSTITUTIVE DIFFERENTIAL GROWTH 1)Receptor-like cytoplasmic kinase, RLCKVII subfamilyO.I.H.G.S.X.
0.6176.7At5g33340833310CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1)Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-mediated disease resistance upon exposure to the pathogen Pseudomonas syringae. Moreover, overexpression of this gene led to the upregulation of two pathogenesis-related genes PR1 and PR2. This upregulation was no longer observed in transgenic lines expressing the bacterial NahG gene encoding a hydroxylase suppressing SA accumulation.O.I.H.G.S.X.
0.6176.7At1g65360842846AGL23 (AGAMOUS-LIKE 23)Encodes AGL23, a Type I MADS-box gene that controls female gametophyte development and the biogenesis of organelles during embryo development.O.I.H.G.S.X.
0.6176.7At5g55080835599AtRAN4 (Ras-related nuclear protein 4)A member of RAN GTPase gene family.O.I.H.G.S.X.
0.6176.7At2g24880817025self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5974.7At1g48910841313YUC10F:oxidoreductase activity, monooxygenase activity, FAD binding;P:anatomical structure morphogenesis;C:cellular_component unknown;BOFMPAO.I.H.G.S.X.
0.5974.7At5g58660835980oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.H.G.S.X.
0.5873.8At1g79370844275CYP79C1member of CYP79CO.I.H.G.S.X.
0.5773.8At5g06020830489self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5673.0At3g55590824724GDP-mannose pyrophosphorylase, putativeF:transferase activity, nucleotidyltransferase activity;P:biosynthetic process;C:unknown;BOAMPFVO.I.H.G.S.X.
0.5570.6At1g51320841555F-box family protein (FBX11)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:chloroplast;POO.I.H.G.S.X.
0.5469.5At4g12140826822zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVO.I.H.G.S.X.
0.5368.6At2g34555818019ATGA2OX3 (gibberellin 2-oxidase 3)F:gibberellin 2-beta-dioxygenase activity;P:gibberellin catabolic process;C:unknown;POBFMO.I.H.G.S.X.
0.5166.3At2g24810817018pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOO.I.H.G.S.X.
0.5065.3At3g25990822196DNA-binding protein GT-1-relatedF:transcription factor activity;P:regulation of transcription;C:unknown;PMO.I.H.G.S.X.
0.4862.5At1g29110839786cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.H.G.S.X.
0.4862.5At1g64030842706serpin family protein / serine protease inhibitor family proteinF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAFO.I.H.G.S.X.
0.4862.5At3g54570824622calmodulin-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;POBFVMO.I.H.G.S.X.
0.4862.5At2g15740816068zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;POMO.I.H.G.S.X.
0.4761.2At1g60980842389ATGA20OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 4)F:gibberellin 20-oxidase activity;P:gibberellin biosynthetic process;C:unknown;POBFMO.I.H.G.S.X.
0.4761.2At5g17150831579-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4659.8At1g54640841906F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4659.8At3g21410821695F-box family protein (FBW1)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;POO.I.H.G.S.X.
0.4659.8At1g20940838688F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4659.8At5g52480835324-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.H.G.S.X.
0.4558.3At1g51290841552F-box family protein (FBX10)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POO.I.H.G.S.X.
0.4558.3At4g05630825935unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4558.3At4g30120829135HMA3 (HEAVY METAL ATPASE 3)encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zincO.I.H.G.S.X.
0.4558.3At1g65640842875DegP4 (DegP protease 4)Encodes a putative DegP protease.O.I.H.G.S.X.
0.4558.3At5g26250832694sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:endomembrane system, integral to membrane, membrane;BFMPOAO.I.H.G.S.X.
0.4558.3At3g03400821266calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.4457.2At1g51210841544UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMOBFVO.I.H.G.S.X.
0.4457.2At1g20690838657-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.2At2g26880817229AGL41 (AGAMOUS-LIKE 41)F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO.I.H.G.S.X.
0.4355.3At2g16290816125-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4355.3At5g53840835465F-box family protein (FBL13)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PO.I.H.G.S.X.
0.4355.3At2g28880817437emb1997 (embryo defective 1997)F:oxo-acid-lyase activity, catalytic activity, anthranilate synthase activity;P:embryonic development ending in seed dormancy;C:chloroplast;BOFMAPO.I.H.G.S.X.
0.4355.3At1g12190837772F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.4355.3At5g66150836747glycosyl hydrolase family 38 proteinF:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:endomembrane system;MBOPFAO.I.H.G.S.X.
0.4253.9At2g42090818809ACT9 (ACTIN 9)actin related gene or pseudogene, based on sequence divergence and lack of expressionO.I.H.G.S.X.
0.4253.9At3g20030821542F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.4253.9At5g42910834303basic leucine zipper transcription factor (BZIP15)F:transcription factor activity, transcription activator activity, DNA binding;P:regulation of transcription, DNA-dependent, response to stress;C:nucleus;PMOFBO.I.H.G.S.X.
0.4152.4At3g06180819792structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;PFOO.I.H.G.S.X.
0.4050.8At2g40820818679-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFOBVAO.I.H.G.S.X.
0.4050.8At1g47765841188F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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