Co-expression analysis

Gene ID	Zm.2497.1.S1_at
Gene name	hypothetical protein LOC100272917
Homology with Arabidopsis	Similar to At4g12400: stress-inducible protein, putative (HF=3e-55)
Module size	17 genes
NF	0.42
%ile	48.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.0	0.91	Zm.2497.1.S1_at	AY107480.1	hypothetical protein LOC100272917	-	3e-55	At4g12400	stress-inducible protein, putative	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.94	Zm.10839.1.S1_at	CF637878	-	-	4e+0	At5g08290	YLS8	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.93	Zm.5048.3.S1_x_at	AY103537.1	hypothetical protein LOC100279926	-	3e-57	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.93	Zm.2550.1.S1_at	CF632382	cinnamoyl CoA reductase1	-	2e-1	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.94	Zm.9637.1.A1_at	BM334419	-	-	4e-1	At1g31060	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	Zm.3503.1.A1_at	BM347620	hypothetical protein LOC100217151	-	2e+0	At2g29580	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	Zm.6732.1.S1_s_at	AF440221.1	HMG-like nucleosome/chromatin assembly factor D	-	3e-11	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.94	Zm.19062.1.S1_at	CO531568	glycine-rich RNA-binding protein 2	-	6e+0	At5g51040	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.94	Zm.13138.1.S1_at	CA404833	-	-	5e-14	At3g03050	CSLD3 (CELLULOSE SYNTHASE-LIKE D3)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.93	Zm.6995.1.A1_at	BM336044	prefoldin subunit 3	-	6e-10	At5g49510	PDF3 (PREFOLDIN 3)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.94	Zm.803.1.A1_at	CF625813	hypothetical protein LOC100274731	-	6e-1	At5g25210	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.95	Zm.13987.1.A1_at	AY107212.1	-	-	1e-21	At5g13030	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.94	Zm.13752.1.S1_at	AY105902.1	serine palmitoyltransferase 2	-	2e-18	At5g23670	LCB2	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.94	Zm.5707.1.S1_at	CF631594	copper chaperone	-	3e-2	At1g66240	ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.6778.2.S1_at	AI770701	-	-	8e-4	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.19356.1.A1_at	CO533600	-	-	5e+0	At3g27590	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.94	Zm.17333.1.A1_at	CK369962	-	-	3e+0	At5g21280	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.8	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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