Co-expression analysis

Gene ID Zm.24.2.S1_at
Gene name viviparous1
Homology with ArabidopsisSimilar to At2g40765: unknown protein (HF=3e+0)
Module size 7 genes
NF 0.64
%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.97Zm.24.2.S1_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinO.I.H.G.S.X.
0.6381.10.97Zm.10865.1.A1_atCF638037hypothetical protein LOC100275271-1e-6At2g44090-O.I.H.G.S.X.
0.6179.50.97Zm.1047.1.S1_atCB381142hypothetical protein LOC100277178-1e+0At1g10865-O.I.H.G.S.X.
0.6077.80.97Zm.17589.1.A1_atCK144401protein binding protein-3e-2At1g77830zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6077.80.97Zm.264.2.A1_x_atCF012670acetyl-coenzyme A carboxylase-8e+0At5g02890transferase family proteinO.I.H.G.S.X.
0.5976.10.97Zm.4618.1.A1_atAW066311pre-mRNA-splicing factor ISY1-4e-7At3g18790-O.I.H.G.S.X.
0.5369.10.97Zm.14052.1.A1_atCF036019hypothetical protein LOC100272508-3e-17At2g22400NOL1/NOP2/sun family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.10.94Zm.17670.1.A1_atCF637959--6e+0At5g59080unknown proteinO.I.H.G.S.X.
0.5571.60.95Zm.5323.1.A1_atCK827563hypothetical protein LOC100194352-2e+0At4g13968-O.I.H.G.S.X.
0.5571.60.97Zm.3611.1.S1_atCA403298choline-phosphate cytidylyltransferase B-2e-22At4g15130catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseO.I.H.G.S.X.
0.4455.70.97Zm.24.2.S1_a_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinO.I.H.G.S.X.
0.4251.30.93Zm.19180.1.S1_atCO523146gamma-secretase subunit APH-1B-1e-11At2g31440protein bindingO.I.H.G.S.X.
0.4048.50.95ZmAffx.1146.1.S1_atAW400130--3e+0At5g51860MADS-box protein (AGL72)O.I.H.G.S.X.
0.4048.50.96Zm.3132.1.S1_atAY112211.1--1e-10At5g16040regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.4048.50.97Zm.5399.1.A1_atBM338134--2e-11At4g29130HXK1 (HEXOKINASE 1)O.I.H.G.S.X.
0.4048.50.97Zm.7150.3.S1_atAY109249.1--2e+0At3g29575AFP3 (ABI FIVE BINDING PROTEIN 3)O.I.H.G.S.X.
0.3945.60.90Zm.17215.1.A1_atCO523350RING zinc finger protein-like-2e+0At5g5144023.5 kDa mitochondrial small heat shock protein (HSP23.5-M)O.I.H.G.S.X.
0.3844.20.96Zm.15826.1.A1_atCF602424Histone H4-2e-31At5g59690histone H4O.I.H.G.S.X.
0.3437.20.96Zm.3961.1.S1_atCK370362hypothetical protein LOC100272531-3e-7At1g70290ATTPS8O.I.H.G.S.X.
0.3336.00.94Zm.13976.1.S1_atAY106277.1RNA recognition motif family protein-1e-1At5g11830-O.I.H.G.S.X.
0.3233.40.95Zm.13539.1.A1_atAY108296.1--5e+0At2g13450unknown proteinO.I.H.G.S.X.
0.3233.40.96Zm.4578.2.S1_atCO521260hypothetical protein LOC100279630 /// MADS1-2e-4At2g22540SVP (SHORT VEGETATIVE PHASE)O.I.H.G.S.X.
0.3233.40.94Zm.3968.1.A1_atAY112244.1hypothetical protein LOC100278255-5e+0At1g60625RALFL6 (RALF-LIKE 6)O.I.H.G.S.X.
0.3233.40.93ZmAffx.465.1.A1_atAI677343DTW domain containing protein-8e-1At1g02450NIMIN1 (NIM1-INTERACTING 1)O.I.H.G.S.X.
0.3131.60.96Zm.7038.1.A1_atAY107850.1hypothetical protein LOC100192898-1e+0At5g24170-O.I.H.G.S.X.
0.3131.60.94Zm.15432.1.S1_atCA401222--9e+0At5g02080DNA/panthothenate metabolism flavoprotein family proteinO.I.H.G.S.X.
0.3131.60.96Zm.17102.1.A1_atCD527578Histone H3.2-4e-29At1g09200histone H3O.I.H.G.S.X.
0.3029.80.94Zm.15069.1.A1_atCF004181hypothetical protein LOC100280203-2e-12At2g44350ATCSO.I.H.G.S.X.
0.3029.80.94Zm.688.1.A1_atAJ250985.1outer cell layer3-8e-9At4g00730ANL2 (ANTHOCYANINLESS 2)O.I.H.G.S.X.
0.3029.80.95Zm.13837.1.A1_atAY104223.1hypothetical protein LOC100193655-6e-11At2g43770transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2928.10.93Zm.19061.1.A1_atCO532046hypothetical protein LOC100193436-5e+0At3g62370unknown proteinO.I.H.G.S.X.
0.2928.10.93Zm.17858.1.A1_atAY111541.1hypothetical protein AY111541-2e+0At3g53620AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)O.I.H.G.S.X.
0.2622.70.96ZmAffx.286.1.A1_atAI670419--2e-1At1g07745RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)O.I.H.G.S.X.
0.2521.30.95Zm.33.1.S1_s_atM12144.1alpha zein 19kDa D1 /// alpha zein 19kDa D2 /// hypothetical protein LOC100101516 /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1A alpha zein protein-7e-1At1g18265unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.398.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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