Co-expression analysis

Gene ID Zm.24.2.S1_at
Gene name viviparous1
Homology with ArabidopsisSimilar to At2g40765: unknown protein (HF=3e+0)
Module size 7 genes
NF 0.64
%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.97Zm.24.2.S1_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinO.I.H.G.S.X.
0.6381.10.97Zm.10865.1.A1_atCF638037hypothetical protein LOC100275271-1e-6At2g44090-O.I.H.G.S.X.
0.6179.50.97Zm.1047.1.S1_atCB381142hypothetical protein LOC100277178-1e+0At1g10865-O.I.H.G.S.X.
0.6077.80.97Zm.17589.1.A1_atCK144401protein binding protein-3e-2At1g77830zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6077.80.97Zm.264.2.A1_x_atCF012670acetyl-coenzyme A carboxylase-8e+0At5g02890transferase family proteinO.I.H.G.S.X.
0.5976.10.97Zm.4618.1.A1_atAW066311pre-mRNA-splicing factor ISY1-4e-7At3g18790-O.I.H.G.S.X.
0.5369.10.97Zm.14052.1.A1_atCF036019hypothetical protein LOC100272508-3e-17At2g22400NOL1/NOP2/sun family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.398.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.42.1.S1_at, orthologous to the query gene, Zm.24.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9498.9Ta.42.1.S1_atAt2g40765--5e-6At3g24650ABI3 (ABA INSENSITIVE 3)O.I.H.G.S.X.
0.7087.2Ta.28535.1.S1_atAt2g40765--1e+0At5g55135unknown proteinO.I.H.G.S.X.
0.6583.9TaAffx.64496.1.A1_atAt2g40765--4e+0At5g48920TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)O.I.H.G.S.X.
0.6383.1Ta.7258.1.S1_atAt2g40765--5e-2At2g20770GCL2 (GCR2-LIKE 2)O.I.H.G.S.X.
0.6282.3Ta.14496.1.S1_x_atAt2g40765--2e-8At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)O.I.H.G.S.X.
0.5979.8Ta.14499.1.S1_atAt2g40765--1e+0At3g50830COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2)O.I.H.G.S.X.
0.5779.2Ta.5809.1.S1_atAt2g40765--8e-4At3g22740HMT3O.I.H.G.S.X.
0.4869.0Ta.23082.1.S1_s_atAt2g40765--2e+0At3g17160unknown proteinO.I.H.G.S.X.
0.4464.5Ta.5737.1.A1_atAt2g40765--6e-3At2g20130LCV1 (LIKE COV 1)O.I.H.G.S.X.
0.4464.5Ta.5760.1.S1_atAt2g40765--2e+0At5g55135unknown proteinO.I.H.G.S.X.
0.3854.7Ta.11940.1.A1_atAt2g40765--1e+0At2g24205-O.I.H.G.S.X.
0.3549.8Ta.22349.1.S1_atAt2g40765--3e+0At3g49845-O.I.H.G.S.X.
0.3448.1Ta.28810.1.S1_atAt2g40765--6e+0At4g34970ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)O.I.H.G.S.X.
0.2839.2Ta.21933.3.S1_x_atAt2g40765--3e+0At5g51210OLEO3 (OLEOSIN3)O.I.H.G.S.X.
0.2633.6Ta.25073.1.S1_s_atAt2g40765--2e+1At5g38160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2532.1Ta.13385.1.S1_atAt2g40765--4e+0At1g5868440S ribosomal protein S2, putativeO.I.H.G.S.X.
0.2430.3Ta.25228.1.S1_atAt2g40765--1e+0At1g59580ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2)O.I.H.G.S.X.
0.1922.4Ta.27001.2.S1_atAt2g40765--2e+0At4g34870ROC5 (ROTAMASE CYCLOPHILIN 5)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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