Co-expression analysis

Gene ID Zm.24.2.S1_at
Gene name viviparous1
Homology with ArabidopsisSimilar to At2g40765: unknown protein (HF=3e+0)
Module size 7 genes
NF 0.64
%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.97Zm.24.2.S1_atAJ001635.1viviparous1-3e+0At2g40765unknown proteinO.I.H.G.S.X.
0.6381.10.97Zm.10865.1.A1_atCF638037hypothetical protein LOC100275271-1e-6At2g44090-O.I.H.G.S.X.
0.6179.50.97Zm.1047.1.S1_atCB381142hypothetical protein LOC100277178-1e+0At1g10865-O.I.H.G.S.X.
0.6077.80.97Zm.17589.1.A1_atCK144401protein binding protein-3e-2At1g77830zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6077.80.97Zm.264.2.A1_x_atCF012670acetyl-coenzyme A carboxylase-8e+0At5g02890transferase family proteinO.I.H.G.S.X.
0.5976.10.97Zm.4618.1.A1_atAW066311pre-mRNA-splicing factor ISY1-4e-7At3g18790-O.I.H.G.S.X.
0.5369.10.97Zm.14052.1.A1_atCF036019hypothetical protein LOC100272508-3e-17At2g22400NOL1/NOP2/sun family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.398.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL241Contig1_at, orthologous to the query gene, Zm.24.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9298.9PsAffx.CL241Contig1_atAt2g40765--6e-1At2g46820PSI-P (PHOTOSYSTEM I P SUBUNIT)O.I.H.G.S.X.
0.6786.1PsAffx.CL566Contig1_atAt2g40765--3e-1At1g65484unknown proteinO.I.H.G.S.X.
0.5778.8PsAffx.CL591Contig1_atAt2g40765--4e+0At1g29590eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putativeO.I.H.G.S.X.
0.5576.3PsAffx.CL863Contig1_atAt2g40765--8e+0At4g09840unknown proteinO.I.H.G.S.X.
0.3853.3GmaAffx.80936.1.S1_s_atAt2g40765--1e-2At5g50080DNA binding / transcription factorO.I.H.G.S.X.
0.3243.7PsAffx.CL1401Contig1_atAt2g40765--2e-5At3g56350superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeO.I.H.G.S.X.
0.3142.2PsAffx.CL2436Contig1_s_atAt2g40765--5e-2At5g59360unknown proteinO.I.H.G.S.X.
0.3040.4PsAffx.psHB044xB02f_atAt2g40765--6e-1At1g13480unknown proteinO.I.H.G.S.X.
0.2735.7PsAffx.CL2Contig12_atAt2g40765--8e-1At2g42280basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2532.6PsAffx.CL17Contig2_atAt2g40765--4e+1At5g20160ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.2126.6PsAffx.CL210Contig1_s_atAt2g40765--5e+0At3g47490HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.2025.1PsAffx.CL995Contig1_atAt2g40765--3e+0At3g01970WRKY45O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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