CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.24.2.S1_at

Gene name viviparous1
Homology with Arabidopsis Similar to At2g40765: unknown protein (HF=3e+0)

Module size 7 genes

NF 0.64

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 75.1 0.97 Zm.24.2.S1_at AJ001635.1 viviparous1 - 3e+0 At2g40765 unknown protein O.I. H.G. S.X.
0.63 81.1 0.97 Zm.10865.1.A1_at CF638037 hypothetical protein LOC100275271 - 1e-6 At2g44090 - O.I. H.G. S.X.
0.61 79.5 0.97 Zm.1047.1.S1_at CB381142 hypothetical protein LOC100277178 - 1e+0 At1g10865 - O.I. H.G. S.X.
0.60 77.8 0.97 Zm.17589.1.A1_at CK144401 protein binding protein - 3e-2 At1g77830 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.60 77.8 0.97 Zm.264.2.A1_x_at CF012670 acetyl-coenzyme A carboxylase - 8e+0 At5g02890 transferase family protein O.I. H.G. S.X.
0.59 76.1 0.97 Zm.4618.1.A1_at AW066311 pre-mRNA-splicing factor ISY1 - 4e-7 At3g18790 - O.I. H.G. S.X.
0.53 69.1 0.97 Zm.14052.1.A1_at CF036019 hypothetical protein LOC100272508 - 3e-17 At2g22400 NOL1/NOP2/sun family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.3 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8 98.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9 98.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9 98.3 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4 98.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g40765, orthologous to the query gene, Zm.24.2.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g40765 818673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial respiratory chain complex III;P O.I. H.G. S.X.
0.33 38.1 At5g47890 834840 NADH-ubiquinone oxidoreductase B8 subunit, putative F:oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;MFPO O.I. H.G. S.X.
0.25 22.6 At5g45010 834532 ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.21 15.8 At3g26360 822240 unknown protein F:unknown;P:unknown;C:unknown;PBO O.I. H.G. S.X.
0.21 15.8 At1g08780 837400 AIP3 (ABI3-INTERACTING PROTEIN 3) F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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