Co-expression analysis

Gene ID Zm.2376.6.S1_x_at
Gene name cortical cell-delineating protein
Homology with ArabidopsisSimilar to At5g63740: zinc finger protein-related (HF=7e-3)
Module size 6 genes
NF 0.53
%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.97Zm.2376.6.S1_x_atCF020992cortical cell-delineating protein-7e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.6785.80.97Zm.5479.1.A1_atAY109635.1--3e-1At1g71230CSN5B (COP9-SIGNALOSOME 5B)O.I.H.G.S.X.
0.6785.80.97Zm.6498.1.A1_atAI691894--3e-4At1g10050glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing proteinO.I.H.G.S.X.
0.5775.10.97Zm.16449.1.A1_atAY112082.1--1e+0At3g29034unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.3135.1.S1_atCD981826catalytic/ protein phosphatase type 2C-2e-13At1g47380protein phosphatase 2C-related / PP2C-relatedO.I.H.G.S.X.
0.2419.80.97Zm.17572.2.S1_atCF972387heat- and acid-stable phosphoprotein-3e-8At5g46020unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6179.50.95Zm.6971.1.A1_atAY107357.1--1e-1At1g58460unknown proteinO.I.H.G.S.X.
0.5976.10.94Zm.5428.1.S1_atAI855040ubiquitin-like 1-activating enzyme E1A-8e-1At4g24940SAE1A (SUMO-ACTIVATING ENZYME 1A)O.I.H.G.S.X.
0.5976.10.96Zm.5909.1.S1_atAI665315Hypothetical protein LOC100192467-3e+0At2g01370DNA-binding storekeeper protein-relatedO.I.H.G.S.X.
0.5065.70.96Zm.6518.1.S1_atAW927338plastid-lipid-associated protein 2-2e-4At4g04020FIB (FIBRILLIN)O.I.H.G.S.X.
0.5065.70.98Zm.2163.1.S1_atAY105593.1--2e-4At3g59400GUN4O.I.H.G.S.X.
0.4658.40.96Zm.7413.1.A1_atBM078318lysM domain containing protein-1e-1At1g55000peptidoglycan-binding LysM domain-containing proteinO.I.H.G.S.X.
0.4048.50.96Zm.4654.1.A1_a_atAI666008hypothetical protein LOC100272406-2e-4At1g72210basic helix-loop-helix (bHLH) family protein (bHLH096)O.I.H.G.S.X.
0.4048.50.97Zm.2489.1.A1_atCD447064mitochondrial chaperonin-60-8e-82At3g23990HSP60 (HEAT SHOCK PROTEIN 60)O.I.H.G.S.X.
0.3641.30.97Zm.6334.1.A1_atAY108462.1hypothetical protein LOC100279181-5e+0At2g29840protein binding / zinc ion bindingO.I.H.G.S.X.
0.3336.00.96Zm.505.2.A1_atAI665681Glucose translocator1-8e-1Atcg00800-O.I.H.G.S.X.
0.3336.00.97Zm.6721.6.A1_atCK371147Histone H4-5e-28At5g59690histone H4O.I.H.G.S.X.
0.3336.00.98Zm.16843.1.S1_atAI978092--2e-47At1g50370serine/threonine protein phosphatase, putativeO.I.H.G.S.X.
0.3233.40.93Zm.11946.1.A1_atBM382035--2e+0At1g77093-O.I.H.G.S.X.
0.3131.60.97Zm.14807.1.S1_s_atBU050489Hypothetical protein LOC100192365-3e+0At5g15560unknown proteinO.I.H.G.S.X.
0.3029.80.93Zm.5751.1.A1_atAI649424peroxidase-2e+1At5g50760auxin-responsive family proteinO.I.H.G.S.X.
0.2928.10.93Zm.4522.1.S1_atAI734575hypothetical protein LOC100194076-4e-1At1g56710glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.2928.10.96Zm.13030.1.S1_atAY108564.1--5e+0At3g17940aldose 1-epimerase family proteinO.I.H.G.S.X.
0.2928.10.97Zm.19106.1.A1_atCO049276--7e+0At4g08039-O.I.H.G.S.X.
0.2724.60.93Zm.5177.1.S1_atCK394817ATP-dependent Clp protease ATP-binding subunit clpA-2e+0At5g03710unknown proteinO.I.H.G.S.X.
0.2724.60.95Zm.2716.1.S1_atCD440659--3e+0At4g28700AMT1O.I.H.G.S.X.
0.2724.60.96Zm.13707.1.A1_atBQ547937rhythmically expressed protein-2e-14At2g41250haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.2521.30.93Zm.2857.1.A1_atAW231567--5e+0At2g17705unknown proteinO.I.H.G.S.X.
0.2521.30.93Zm.4820.1.A1_a_atBG319643hypothetical protein LOC100192684-1e-35At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.
0.2521.30.96Zm.15185.1.A1_atBM266737--9e+0At2g17640ATSERAT3O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM253272ZM_4.5d_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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