Co-expression analysis

Gene ID Zm.2376.6.S1_x_at
Gene name cortical cell-delineating protein
Homology with ArabidopsisSimilar to At5g63740: zinc finger protein-related (HF=7e-3)
Module size 6 genes
NF 0.53
%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.97Zm.2376.6.S1_x_atCF020992cortical cell-delineating protein-7e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.6785.80.97Zm.5479.1.A1_atAY109635.1--3e-1At1g71230CSN5B (COP9-SIGNALOSOME 5B)O.I.H.G.S.X.
0.6785.80.97Zm.6498.1.A1_atAI691894--3e-4At1g10050glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing proteinO.I.H.G.S.X.
0.5775.10.97Zm.16449.1.A1_atAY112082.1--1e+0At3g29034unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.3135.1.S1_atCD981826catalytic/ protein phosphatase type 2C-2e-13At1g47380protein phosphatase 2C-related / PP2C-relatedO.I.H.G.S.X.
0.2419.80.97Zm.17572.2.S1_atCF972387heat- and acid-stable phosphoprotein-3e-8At5g46020unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM253272ZM_4.5d_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.28122.1.S1_at, orthologous to the query gene, Zm.2376.6.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.1Ta.28122.1.S1_atAt5g63740--2e+1At5g19257unknown proteinO.I.H.G.S.X.
0.5678.6TaAffx.110652.1.S1_atAt5g63740--1e-2At2g23690unknown proteinO.I.H.G.S.X.
0.5475.5TaAffx.110167.1.S1_atAt5g63740--4e+0At4g14440HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)O.I.H.G.S.X.
0.5273.7TaAffx.82721.1.S1_atAt5g63740--3e+1At4g20780calcium-binding protein, putativeO.I.H.G.S.X.
0.5273.7Ta.24389.1.S1_atAt5g63740--9e-1At5g54640RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)O.I.H.G.S.X.
0.5273.7TaAffx.107008.1.S1_atAt5g63740--7e-2At2g24940AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)O.I.H.G.S.X.
0.4969.7TaAffx.120245.1.S1_atAt5g63740--1e-1At4g17800DNA-binding protein-relatedO.I.H.G.S.X.
0.4969.7TaAffx.31847.1.S1_atAt5g63740--1e+0At1g21864-O.I.H.G.S.X.
0.4869.0TaAffx.99246.2.S1_atAt5g63740--1e+0At3g16770ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)O.I.H.G.S.X.
0.4869.0TaAffx.85723.1.S1_atAt5g63740--1e+0At4g13950RALFL31 (ralf-like 31)O.I.H.G.S.X.
0.4869.0TaAffx.117120.1.S1_atAt5g63740--4e+0At1g56700pyrrolidone-carboxylate peptidase family proteinO.I.H.G.S.X.
0.4869.0TaAffx.105503.1.S1_atAt5g63740--1e+0At5g44200CBP20 (CAP-BINDING PROTEIN 20)O.I.H.G.S.X.
0.4767.9Ta.26652.1.A1_atAt5g63740--1e-3At1g36050unknown proteinO.I.H.G.S.X.
0.4666.8TaAffx.51397.1.S1_atAt5g63740--4e-49At1g23490ATARF1 (ADP-RIBOSYLATION FACTOR 1)O.I.H.G.S.X.
0.4565.2TaAffx.114049.1.S1_atAt5g63740--5e+0At4g33560unknown proteinO.I.H.G.S.X.
0.4464.5TaAffx.120617.1.S1_atAt5g63740--4e+0At2g39470PPL2 (PsbP-like protein 2)O.I.H.G.S.X.
0.4464.5TaAffx.58994.1.S1_atAt5g63740--4e+0At3g52510-O.I.H.G.S.X.
0.4464.5Ta.26673.1.A1_atAt5g63740--1e-9At2g32950COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)O.I.H.G.S.X.
0.4464.5TaAffx.83840.1.S1_atAt5g63740--4e+0At1g28170sulfotransferase family proteinO.I.H.G.S.X.
0.4464.5TaAffx.119081.1.S1_atAt5g63740--2e+1At5g45700NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.4362.2TaAffx.132656.2.S1_atAt5g63740--1e+0At1g76500SOB3 (SUPPRESSOR OF PHYB-4#3)O.I.H.G.S.X.
0.4159.6TaAffx.85941.1.S1_atAt5g63740--2e+1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4159.6TaAffx.78428.1.S1_atAt5g63740--1e+0At4g15610integral membrane family proteinO.I.H.G.S.X.
0.4159.6TaAffx.79532.1.S1_atAt5g63740--3e+1At4g02360unknown proteinO.I.H.G.S.X.
0.4058.4Ta.3911.2.S1_s_atAt5g63740--4e+0At2g44290protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)O.I.H.G.S.X.
0.4058.4Ta.16201.1.S1_atAt5g63740--3e+0At5g57535unknown proteinO.I.H.G.S.X.
0.3854.7TaAffx.119035.1.A1_atAt5g63740--1e+0At2g13720ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)O.I.H.G.S.X.
0.3753.0TaAffx.111311.1.S1_atAt5g63740--1e+0At1g61940AtTLP4 (TUBBY LIKE PROTEIN 4)O.I.H.G.S.X.
0.3651.9TaAffx.82014.1.S1_atAt5g63740--1e+0At1g45063copper ion binding / electron carrierO.I.H.G.S.X.
0.3549.8Ta.21581.1.S1_atAt5g63740--4e+0At2g36460fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.3448.1TaAffx.120295.1.S1_atAt5g63740--2e+1At5g42504unknown proteinO.I.H.G.S.X.
0.3346.9TaAffx.51905.1.S1_atAt5g63740--3e+0At3g25760AOC1 (ALLENE OXIDE CYCLASE 1)O.I.H.G.S.X.
0.3346.9TaAffx.57555.1.S1_atAt5g63740--2e+1At5g67600unknown proteinO.I.H.G.S.X.
0.3346.9Ta.16453.1.S1_atAt5g63740--1e+0At4g29650cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseO.I.H.G.S.X.
0.3346.9TaAffx.5596.1.S1_atAt5g63740--3e+0At1g12250thylakoid lumenal protein-relatedO.I.H.G.S.X.
0.3346.9TaAffx.85817.1.S1_atAt5g63740--4e+0At4g17800DNA-binding protein-relatedO.I.H.G.S.X.
0.3244.4Ta.5258.1.S1_atAt5g63740--2e-3At2g35780scpl26 (serine carboxypeptidase-like 26)O.I.H.G.S.X.
0.3142.7Ta.16516.1.S1_atAt5g63740--9e-1At5g35475-O.I.H.G.S.X.
0.3040.9TaAffx.6157.1.S1_atAt5g63740--4e+0At2g42930glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.2939.2TaAffx.53587.2.S1_atAt5g63740--7e-2At4g34290SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.2839.2TaAffx.50210.1.S1_atAt5g63740--7e-2At1g60880AGL56O.I.H.G.S.X.
0.2532.1TaAffx.64156.1.S1_atAt5g63740--4e+0At5g19830aminoacyl-tRNA hydrolaseO.I.H.G.S.X.
0.1922.4TaAffx.93677.1.S1_atAt5g63740--3e+0At5g19473-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage