Co-expression analysis

Gene ID	Zm.2355.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g24770: CLE41 (CLAVATA3/ESR-RELATED 41) (HF=9e+0)
Module size	17 genes
NF	0.44
%ile	52.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.97	Zm.2355.1.A1_at	CF043465	-	-	9e+0	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.98	Zm.2678.1.A1_at	BM339111	hypothetical protein LOC100193236	-	2e-1	At1g05180	AXR1 (AUXIN RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	Zm.17915.1.A1_at	CF038577	-	-	7e-103	Atmg00830	-	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.97	Zm.18474.1.A1_at	CO531196	hypothetical protein LOC100192651	-	6e+0	At5g61997	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.6439.2.A1_at	AI881500	eucaryotic initiation factor7	-	7e-14	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.3707.1.A1_at	AY107773.1	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.98	Zm.10287.1.S1_at	BM736731	-	-	1e+0	At2g45250	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.19237.1.A1_at	CA402877	hypothetical protein LOC100216898	-	2e-1	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.12595.1.S1_at	BG266819	-	-	1e-7	At1g09620	ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.2713.2.S1_a_at	AI881541	-	-	1e-30	At5g60790	ATGCN1	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.17660.1.S1_at	AY106360.1	-	-	4e-1	At4g39720	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.98	Zm.18125.1.S1_at	CN844337	-	-	4e-1	At3g47380	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.12951.1.S1_at	CD444057	hypothetical protein LOC100274682	-	3e+0	At5g13450	ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.15744.1.A1_at	CD445730	-	-	7e-1	At1g70209	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.18281.1.S1_at	BG840860	hypothetical protein LOC100277869	-	5e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	ZmAffx.89.1.S1_at	AI665353	-	-	1e+1	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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