Co-expression analysis

Gene ID	Zm.235.1.S1_at
Gene name	SBP-domain protein1
Homology with Arabidopsis	Similar to At2g33810: SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) (HF=1e-5)
Module size	24 genes
NF	0.22
%ile	17.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.5	0.92	Zm.235.1.S1_at	AJ011614.1	SBP-domain protein1	-	1e-5	At2g33810	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.94	Zm.10774.1.A1_at	CD972574	hypothetical protein LOC100193506	-	6e-1	At5g14240	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.5023.1.A1_at	CF628909	multiple myeloma tumor-associated protein 2	-	1e-1	At3g52220	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.95	Zm.9437.1.A1_at	BM268875	-	-	6e+0	At5g43540	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.7881.1.A1_a_at	BM080283	-	-	3e-3	At4g24590	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.5504.1.A1_at	AY105885.1	hypothetical protein LOC100273181	-	5e+0	At2g28370	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.95	Zm.16278.1.A1_at	CO532740	hypothetical protein LOC100193038	-	7e-1	At1g31830	amino acid permease family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.95	Zm.19018.1.A1_at	CO532922	hypothetical protein LOC100193009	-	3e+0	At4g38120	binding	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.3714.1.A1_at	BQ779267	eukaryotic translation initiation factor 3 subunit 3	-	2e-32	At1g10840	TIF3H1	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.10842.1.S1_a_at	AF493800.1	DRE binding factor 1	-	1e-4	At2g22200	AP2 domain-containing transcription factor	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.94	Zm.5855.1.A1_at	AY104601.1	-	-	4e-31	At1g75850	VPS35B (VPS35 HOMOLOG B)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.95	Zm.752.2.A1_at	CD446884	hypothetical protein LOC100274298	-	9e-49	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.983.2.A1_at	AI396452	hypothetical protein LOC100194356	-	1e-23	At1g73230	nascent polypeptide-associated complex (NAC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.10294.1.S1_at	CD944058	-	-	2e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.477.1.A2_a_at	AY109348.1	brittle stalk-2-like protein 3	-	1e-15	At5g60920	COB (COBRA)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.7777.1.A1_at	BM079863	F-box domain containing protein	-	5e+0	At5g60964	-	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.3384.1.A1_x_at	BI319306	subtilisin-chymotrypsin inhibitor CI-1B /// subtilisin-chymotrypsin inhibitor CI-1B	-	9e+0	At5g65687	transporter-related	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.96	Zm.227.1.S1_at	D50679.1	ferredoxin-sulfite reductase precursor	-	2e-12	At5g04590	SIR	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.94	Zm.237.1.S1_at	AJ011616.1	SBP-domain protein3	-	2e-8	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.95	Zm.5185.1.A1_at	AI711952	hypothetical protein LOC100280305	-	1e-36	At3g11945	homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.5099.1.S1_at	AI600819	-	-	7e+0	Atmg00130	-	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.96	Zm.14426.1.S1_at	AY106464.1	-	-	8e-3	At3g54200	-	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.94	Zm.7082.2.S1_at	CO523732	hypothetical protein LOC100194344	-	1e-23	At3g05590	RPL18 (RIBOSOMAL PROTEIN L18)	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.95	Zm.3729.1.A1_at	BE510951	hypothetical protein LOC100194194	-	6e-1	At4g09260	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.6	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.2	96.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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