Co-expression analysis

Gene ID Zm.2329.1.S1_at
Gene name hypothetical protein LOC100192702
Homology with ArabidopsisSimilar to At1g62840: unknown protein (HF=2e+0)
Module size 10 genes
NF 0.09
%ile 5.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.92Zm.2329.1.S1_atAY106201.1hypothetical protein LOC100192702-2e+0At1g62840unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.3925.1.A1_atCF045284hypothetical protein LOC100273553-4e-8At1g31930XLG3 (extra-large GTP-binding protein 3)O.I.H.G.S.X.
0.169.40.97Zm.6645.1.S1_atCF637989NADH ubiquinone oxidoreductase B22-like subunit-2e+0At2g40810AtATG18cO.I.H.G.S.X.
0.158.60.96Zm.12970.1.A1_atCO049279hypothetical protein LOC100193219-7e-7At3g10330transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)O.I.H.G.S.X.
0.104.60.96Zm.13556.1.A1_atAY108151.1--9e-1At5g66490unknown proteinO.I.H.G.S.X.
0.083.40.97ZmAffx.1206.1.S1_s_atBE130052--2e+0At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.072.90.94Zm.6303.1.S1_atAF064707.1--8e-27At5g20950glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.062.30.93Zm.960.1.S1_atBU093044hypothetical protein LOC100274333-1e-4At2g22830SQE2 (squalene epoxidase 2)O.I.H.G.S.X.
0.062.30.95Zm.2915.1.A1_atAW091226--1e+0At3g55610P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2)O.I.H.G.S.X.
0.041.50.96Zm.12377.1.S1_atBQ577907--1e+1At3g10915reticulon family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.398.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
6.697.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.997.3GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.296.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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