Co-expression analysis

Gene ID Zm.2321.3.A1_at
Gene name hypothetical protein LOC100191581
Homology with ArabidopsisSimilar to At3g23050: IAA7 (INDOLE-3-ACETIC ACID 7) (HF=3e-9)
Module size 8 genes
NF 0.03
%ile 1.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6481.70.81Zm.2321.3.A1_atBG841291hypothetical protein LOC100191581-3e-9At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.4048.50.87Zm.2321.2.S1_atAY103603.1--1e-5At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.3336.00.80Zm.8890.2.A1_atCA829436Hypothetical protein LOC100191584-1e-1At4g14130XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)O.I.H.G.S.X.
0.041.50.81Zm.15773.1.A1_a_atCK369842hypothetical protein LOC100275691-4e+0At1g13260RAV1O.I.H.G.S.X.
0.031.10.84Zm.10614.1.A1_atAY105934.1--5e-12At1g23090AST91 (SULFATE TRANSPORTER 91)O.I.H.G.S.X.
0.020.70.84Zm.16182.1.A1_atCF244004nucleoporin p58/p45-2e-3At4g37130hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.020.70.84Zm.5743.1.A1_atCF045866catalytic/ hydrolase-4e+0At5g10360EMB3010 (embryo defective 3010)O.I.H.G.S.X.
0.010.30.81Zm.14845.1.S1_atAY106843.1hypothetical protein LOC100277283-2e+0At4g34020DJ-1 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.098.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM202302B73xMo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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