Co-expression analysis

Gene ID Zm.2298.2.A1_a_at
Gene name hypothetical protein LOC100192687
Homology with ArabidopsisSimilar to At3g14420: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (HF=1e-21)
Module size 10 genes
NF 0.36
%ile 38.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5571.60.94Zm.2298.2.A1_a_atBQ619139hypothetical protein LOC100192687-1e-21At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeO.I.H.G.S.X.
0.5065.70.95Zm.4905.1.S1_atAY106392.1hypothetical protein LOC100272547-1e-14At4g27120unknown proteinO.I.H.G.S.X.
0.4759.90.94Zm.2525.1.A1_atBM380204germin-like protein subfamily 1 member 11-3e-2At1g02335GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)O.I.H.G.S.X.
0.3742.30.95Zm.537.1.A1_a_atAI065500hypothetical protein LOC100194026 /// hypothetical protein LOC100273405-1e-55At4g02930elongation factor Tu, putative / EF-Tu, putativeO.I.H.G.S.X.
0.3538.90.97Zm.6848.3.S1_atAW562823--5e-12At1g09640elongation factor 1B-gamma, putative / eEF-1B gamma, putativeO.I.H.G.S.X.
0.3538.90.96Zm.5566.1.A1_a_atAI461543hypothetical protein LOC100193873 /// mitochondrial ATP synthase-5e-1At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.2724.60.96Zm.17224.1.S1_s_atBM500725--2e-11At3g55870anthranilate synthase, alpha subunit, putativeO.I.H.G.S.X.
0.2724.60.96Zm.2859.1.A1_a_atBM351067alcohol dehydrogenase2-2e-11At1g77120ADH1 (ALCOHOL DEHYDROGENASE 1)O.I.H.G.S.X.
0.2216.90.96Zm.3136.1.A1_atCF625170hypothetical protein LOC100192461-9e-66At4g13930SHM4 (serine hydroxymethyltransferase 4)O.I.H.G.S.X.
0.1912.80.95Zm.15183.1.A1_atBM334953--1e+0At2g25770unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.897.6GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
6.297.4GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.997.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.096.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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