Co-expression analysis

Gene ID	Zm.2269.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g51820: PGM (PHOSPHOGLUCOMUTASE) (HF=1e-7)
Module size	13 genes
NF	0.54
%ile	71.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	82.1	0.98	Zm.2269.1.S1_at	CF631922	-	-	1e-7	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.99	Zm.17694.1.S1_at	CK370322	-	-	5e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.2267.1.S1_a_at	AY105804.1	hypothetical protein LOC100216854	-	7e-7	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	ZmAffx.283.1.S1_at	AI670414	-	-	3e+0	At3g23175	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.2267.1.A1_at	AY105804.1	Hypothetical protein LOC100216854	-	7e-7	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	ZmAffx.57.1.S1_at	AI665066	-	-	1e+1	At3g43083	LCR33 (Low-molecular-weight cysteine-rich 33)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.11993.1.A1_at	BM382482	-	-	4e+0	At3g26980	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.9670.2.A1_a_at	AY110378.1	-	-	4e-4	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.98	Zm.18083.2.A1_at	CK985909	-	-	1e-12	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	ZmAffx.788.1.A1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.99	Zm.7060.1.A1_at	CO530085	-	-	4e-1	At3g10500	anac053 (Arabidopsis NAC domain containing protein 53)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.11764.1.A1_at	AY109047.1	GIR1 /// GIR1	-	1e+0	At5g62210	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.301.2.A1_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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