Co-expression analysis

Gene ID Zm.2265.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g49720: unknown protein (HF=3e+0)
Module size 31 genes
NF 0.34
%ile 34.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.88Zm.2265.1.S1_atAW330882--3e+0At3g49720unknown proteinO.I.H.G.S.X.
0.5469.80.91Zm.13966.2.S1_a_atCF632224hypothetical protein LOC100274039-4e+0At4g29930basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4961.90.92ZmAffx.1068.1.S1_atAI941684Hypothetical protein LOC100192986-3e+0At3g25719unknown proteinO.I.H.G.S.X.
0.4961.90.90Zm.1549.1.A1_atAI612422BCAS2 protein-6e-1At3g22360AOX1BO.I.H.G.S.X.
0.4759.90.91Zm.6306.2.A1_atAI691326Protein kinase catalytic domain-1e-10At1g35670ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)O.I.H.G.S.X.
0.4455.70.90ZmAffx.262.1.A1_s_atAI670379acidic ribosomal protein P3-3e+0At4g27410RD26 (RESPONSIVE TO DESICCATION 26)O.I.H.G.S.X.
0.4352.80.92Zm.1531.1.A1_atBM378607hypothetical protein LOC100191913-2e+1At5g54940eukaryotic translation initiation factor SUI1, putativeO.I.H.G.S.X.
0.4251.30.92ZmAffx.1179.1.A1_atAW927503--1e+1Atmg01060-O.I.H.G.S.X.
0.4251.30.91Zm.6977.5.A1_atAI881652Sucrose synthase-1e-11At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.
0.3641.30.91ZmAffx.225.1.S1_atAI670237--1e+1At5g09470mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3641.30.94Zm.19206.1.A1_atBE552928hypothetical protein LOC100274600-5e-8At2g16860GCIP-interacting family proteinO.I.H.G.S.X.
0.3641.30.92Zm.8110.1.A1_atCF623866hypothetical protein LOC100278802-3e-25At5g49820emb1879 (embryo defective 1879)O.I.H.G.S.X.
0.3538.90.91Zm.12250.1.S1_atBQ294093--4e+0At3g01250unknown proteinO.I.H.G.S.X.
0.3538.90.92Zm.13434.1.A1_atAW562937hypothetical protein LOC100192499-4e-12At5g56090COX15 (cytochrome c oxidase 15)O.I.H.G.S.X.
0.3437.20.93Zm.2821.1.A1_s_atBM351274hypothetical protein LOC100278693-2e+0At2g28510Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.3437.20.92Zm.3314.1.S1_atCF637696DNA binding activity2-6e-29At4g11150TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)O.I.H.G.S.X.
0.3336.00.94Zm.4474.2.A1_atAY108450.1--3e+0At5g46720-O.I.H.G.S.X.
0.3233.40.92ZmAffx.1.1.S1_s_atAY722707.1hypothetical LOC542518-5e-51At1g57870ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)O.I.H.G.S.X.
0.3131.60.93Zm.6666.1.S1_x_atCF049927hypothetical protein LOC100192879-2e-23At1g64520RPN12a (Regulatory Particle non-ATPase 12a)O.I.H.G.S.X.
0.2928.10.94Zm.13523.1.A1_atAY108425.1--6e-1At5g59470PQ-loop repeat family protein / transmembrane family proteinO.I.H.G.S.X.
0.2828.10.90Zm.19299.1.A1_atBM074654--4e-3At4g09270unknown proteinO.I.H.G.S.X.
0.2828.10.92Zm.9425.2.A1_x_atBM350860hypothetical protein LOC100274829-9e-1At2g35430zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.2724.60.91Zm.12069.2.S1_x_atAY112265.1--3e+0At4g32530vacuolar ATP synthase, putative / V-ATPase, putativeO.I.H.G.S.X.
0.2622.70.93Zm.2662.1.A1_atAW066760--8e-11At4g26900AT-HF (HIS HF)O.I.H.G.S.X.
0.2521.30.95Zm.7712.1.A1_atBQ539501--4e+0At4g30097unknown proteinO.I.H.G.S.X.
0.2318.60.91Zm.12387.1.S1_atAW000286--2e+1Atmg01300-O.I.H.G.S.X.
0.2216.90.94Zm.15219.2.A1_a_atBM334263--2e-2At5g45550mob1/phocein family proteinO.I.H.G.S.X.
0.2115.50.93Zm.19189.1.A1_atCO528754hypothetical protein LOC100279787-2e+0At1g01830armadillo/beta-catenin repeat family proteinO.I.H.G.S.X.
0.2014.20.94ZmAffx.588.1.S1_atAI715016--1e+1At4g33100-O.I.H.G.S.X.
0.2014.20.91Zm.13528.1.A1_atCO529656hypothetical protein LOC100216925-4e-1At2g18860syntaxin family proteinO.I.H.G.S.X.
0.147.70.94Zm.19103.1.S1_atCF625279hypothetical protein LOC100193224-3e+0At4g09490RNase H domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.299.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.499.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.799.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.599.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.399.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.999.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.798.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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