Co-expression analysis

Gene ID Zm.2263.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g43050: ATPMEPCRD (HF=7e-5)
Module size 6 genes
NF 0.55
%ile 73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.96Zm.2263.1.A1_atAW330859--7e-5At2g43050ATPMEPCRDO.I.H.G.S.X.
0.6785.80.97Zm.13797.2.A1_atAY105820.1hypothetical protein LOC100279789-8e-4At3g20770EIN3 (ETHYLENE-INSENSITIVE3)O.I.H.G.S.X.
0.6179.50.95Zm.1404.1.A1_atAY108922.1sugar transport protein 5-7e+0At2g37585glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinO.I.H.G.S.X.
0.5065.70.97Zm.12848.1.A1_atAW037142hypothetical protein LOC100273763-5e-1At1g18780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4455.70.96Zm.2925.3.A1_atCF002413Ubiquitin-4e-41At2g47110UBQ6O.I.H.G.S.X.
0.1912.80.96Zm.17843.2.A1_atCD999046hypothetical protein LOC100216964-6e-1At2g47910CRR6 (chlororespiratory reduction 6)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.20.92Zm.19089.1.A1_atCO531671--9e-22At3g15620UVR3 (UV REPAIR DEFECTIVE 3)O.I.H.G.S.X.
0.5065.70.93Zm.10787.1.A1_atCF625193hypothetical protein LOC100274116-2e-13At3g55000TON1A (TONNEAU 1)O.I.H.G.S.X.
0.5065.70.94Zm.16308.1.S1_s_atCF015021hypothetical protein LOC100191269-8e-4At4g34660SH3 domain-containing protein 2 (SH3P2)O.I.H.G.S.X.
0.5065.70.95Zm.12638.1.S1_atBU097459hypothetical protein LOC100216922-8e-7At2g34060peroxidase, putativeO.I.H.G.S.X.
0.4658.40.94Zm.16433.1.A1_atCF348894--7e-2At1g27860unknown proteinO.I.H.G.S.X.
0.4658.40.96Zm.5396.1.A1_atAY112168.1hypothetical protein LOC100216913-8e-5At1g53645hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4455.70.94Zm.10974.1.A1_atCB350776--4e+0At1g71840transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4455.70.94Zm.287.1.S1_atAB042260.1response regulator-7e-5At1g10470ARR4 (RESPONSE REGULATOR 4)O.I.H.G.S.X.
0.4455.70.95Zm.6410.1.A1_atAI691946--2e+0At3g15630unknown proteinO.I.H.G.S.X.
0.4352.80.94Zm.1780.1.A1_atCF629323hypothetical protein LOC100274241-4e-2At5g09400KUP7O.I.H.G.S.X.
0.4149.70.89Zm.4254.1.S1_atAI795722protein binding protein-1e-8At2g02960zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3844.20.92Zm.8655.1.A1_atBM075075--5e+0At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.
0.3641.30.91Zm.4253.1.A1_atBM266771hypothetical protein LOC100277148-4e-2At5g64240AtMC3 (metacaspase 3)O.I.H.G.S.X.
0.3538.90.90Zm.16354.1.S1_atCF019372--1e+0At4g30660hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.3538.90.95Zm.16704.1.A1_atAI738374--3e-10Atmg01130-O.I.H.G.S.X.
0.3538.90.95Zm.1993.1.S1_atBQ539120eyes absent-like protein-2e-1At5g65230AtMYB53 (myb domain protein 53)O.I.H.G.S.X.
0.3131.60.95Zm.6949.1.S1_atCF635740--8e-16At4g31480coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeO.I.H.G.S.X.
0.2928.10.88Zm.7548.1.A1_atBM07890312-oxo-phytodienoic acid reductase5-5e-11At1g76690OPR2O.I.H.G.S.X.
0.2928.10.88ZmAffx.404.1.S1_atAI676832--3e+0At1g74560NRP1 (NAP1-RELATED PROTEIN 1)O.I.H.G.S.X.
0.2928.10.93Zm.13735.1.S1_atAY106209.1hypothetical protein LOC100273905-6e-5At3g07630ADT2 (arogenate dehydratase 2)O.I.H.G.S.X.
0.2928.10.93ZmAffx.406.2.A1_atAI670440--2e-1At1g74650MYB31 (MYB DOMAIN PROTEIN 31)O.I.H.G.S.X.
0.2928.10.94Zm.16247.1.S1_atAY181209.1cold acclimation protein COR413-TM1-1e+1At4g17480palmitoyl protein thioesterase family proteinO.I.H.G.S.X.
0.2928.10.95Zm.9049.1.A1_x_atBM074810--8e-3At5g38940manganese ion binding / nutrient reservoirO.I.H.G.S.X.
0.2724.60.94Zm.18995.1.S1_atCO528199--3e-1At1g47960C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)O.I.H.G.S.X.
0.2622.70.94Zm.15161.1.S1_atCO519231--2e+1At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.2521.30.93Zm.8893.1.A1_atAY107533.1--3e-66At2g38280FAC1 (EMBRYONIC FACTOR1)O.I.H.G.S.X.
0.2521.30.94Zm.19169.1.S1_atCO531136hypothetical protein LOC100279441-3e+0At2g23060GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.2521.30.95Zm.15443.1.S1_atCD484762hypothetical protein LOC100276706-1e-3At3g54085-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.099.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.298.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.598.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320469protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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