Co-expression analysis

Gene ID	Zm.2263.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g43050: ATPMEPCRD (HF=7e-5)
Module size	6 genes
NF	0.55
%ile	73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.96	Zm.2263.1.A1_at	AW330859	-	-	7e-5	At2g43050	ATPMEPCRD	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.13797.2.A1_at	AY105820.1	hypothetical protein LOC100279789	-	8e-4	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.95	Zm.1404.1.A1_at	AY108922.1	sugar transport protein 5	-	7e+0	At2g37585	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.12848.1.A1_at	AW037142	hypothetical protein LOC100273763	-	5e-1	At1g18780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.2925.3.A1_at	CF002413	Ubiquitin	-	4e-41	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.96	Zm.17843.2.A1_at	CD999046	hypothetical protein LOC100216964	-	6e-1	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.3826.1.S1_at, orthologous to the query gene, Zm.2263.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	Ta.3826.1.S1_at	At2g43050	-	-	2e-3	At2g47040	VGD1 (VANGUARD1)	O.I.	H.G.	S.X.	Please select
0.91	98.2	Ta.3743.1.A1_s_at	At2g43050	-	-	5e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	Ta.3925.1.S1_at	At2g43050	-	-	1e+1	At5g51780	basix helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.10208.2.S1_a_at	At2g43050	-	-	1e+0	At4g33310	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.13617.1.A1_at	At2g43050	-	-	1e+0	At3g22436	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.25950.1.S1_at	At2g43050	-	-	1e+0	At2g24640	UBP19 (UBIQUITIN-SPECIFIC PROTEASE 19)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage