Co-expression analysis

Gene ID Zm.2263.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g43050: ATPMEPCRD (HF=7e-5)
Module size 6 genes
NF 0.55
%ile 73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.96Zm.2263.1.A1_atAW330859--7e-5At2g43050ATPMEPCRDO.I.H.G.S.X.
0.6785.80.97Zm.13797.2.A1_atAY105820.1hypothetical protein LOC100279789-8e-4At3g20770EIN3 (ETHYLENE-INSENSITIVE3)O.I.H.G.S.X.
0.6179.50.95Zm.1404.1.A1_atAY108922.1sugar transport protein 5-7e+0At2g37585glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinO.I.H.G.S.X.
0.5065.70.97Zm.12848.1.A1_atAW037142hypothetical protein LOC100273763-5e-1At1g18780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4455.70.96Zm.2925.3.A1_atCF002413Ubiquitin-4e-41At2g47110UBQ6O.I.H.G.S.X.
0.1912.80.96Zm.17843.2.A1_atCD999046hypothetical protein LOC100216964-6e-1At2g47910CRR6 (chlororespiratory reduction 6)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.099.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.298.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.598.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320469protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0399000, orthologous to the query gene, Zm.2263.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7591.9Os03g0399000At2g43050-Pectinesterase family protein1e-3At3g06830pectinesterase family proteinO.I.H.G.S.X.
0.7391.1Os01g0270700At2g43050-Phosphatidylinositol 3- and 4-kinase domaincontaining protein7e-1At2g24060translation initiation factor 3 (IF-3) family proteinO.I.H.G.S.X.
0.5676.3Os07g0620600At2g43050-Conserved hypothetical protein9e-1At4g24990ATGP4O.I.H.G.S.X.
0.5371.3Os07g0240200At2g43050-Beta-1,3 glucanase precursor (EC 3.2.1.39)3e+0At3g46570glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.5068.0Os02g0815100At2g43050-C2 domain containing protein6e-1At3g06610DNA-binding enhancer protein-relatedO.I.H.G.S.X.
0.4660.9Os01g0914700At2g43050-Peptidase A22B, minor histocompatibility antigenH13 family protein3e-4At1g05820aspartic-type endopeptidase/ peptidaseO.I.H.G.S.X.
0.4051.1Os06g0590600At2g43050-Beta-1,3-glucanase-like protein1e-5At5g64790glycosyl hydrolase family 17 proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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