Co-expression analysis

Gene ID	Zm.2263.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g43050: ATPMEPCRD (HF=7e-5)
Module size	6 genes
NF	0.55
%ile	73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.96	Zm.2263.1.A1_at	AW330859	-	-	7e-5	At2g43050	ATPMEPCRD	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.13797.2.A1_at	AY105820.1	hypothetical protein LOC100279789	-	8e-4	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.95	Zm.1404.1.A1_at	AY108922.1	sugar transport protein 5	-	7e+0	At2g37585	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.12848.1.A1_at	AW037142	hypothetical protein LOC100273763	-	5e-1	At1g18780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.2925.3.A1_at	CF002413	Ubiquitin	-	4e-41	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.96	Zm.17843.2.A1_at	CD999046	hypothetical protein LOC100216964	-	6e-1	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.psHB012xF21f_s_at, orthologous to the query gene, Zm.2263.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	PsAffx.psHB012xF21f_s_at	At2g43050	-	-	9e-25	At2g19520	FVE	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.56431.1.S1_x_at	At2g43050	-	-	1e-9	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.55872.1.S1_at	At2g43050	-	-	8e-1	At2g41120	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.86434.1.S1_s_at	At2g43050	-	-	3e-25	At3g13570	SCL30a	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.39028.1.S1_at	At2g43050	-	-	4e-8	At4g26000	PEP (PEPPER)	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.46100.1.S1_at	At2g43050	-	-	8e-9	At3g02680	NBS1 (NIJMEGEN BREAKAGE SYNDROME 1)	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.448.1.S1_at	At2g43050	-	-	2e-73	At3g44600	CYP71 (CYCLOPHILIN71)	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.83790.1.S1_at	At2g43050	-	-	6e-25	At1g16190	DNA repair protein RAD23, putative	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.46716.1.S1_at	At2g43050	-	-	2e-11	At3g03740	ATBPM4 (BTB-POZ and MATH domain 4)	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.56431.1.S1_at	At2g43050	-	-	1e-9	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.17924.2.S1_at	At2g43050	-	-	2e-14	At5g17440	LUC7 N_terminus domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.85901.1.S1_at	At2g43050	-	-	3e-35	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.63282.1.S1_at	At2g43050	-	-	2e-10	At5g40490	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.87598.1.S1_at	At2g43050	-	-	8e-1	At2g13125	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.7498.3.S1_at	At2g43050	-	-	4e-71	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.29525.1.S1_at	At2g43050	-	-	2e-8	At3g58560	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.91918.1.S1_at	At2g43050	-	-	4e-149	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.5672.9.S1_at	At2g43050	-	-	2e-102	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.5135.2.S1_at	At2g43050	-	-	2e-42	At5g08500	transmembrane CLPTM1 family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.43069.1.S1_at	At2g43050	-	-	4e-7	At1g14570	UBX domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.52015.1.S1_at	At2g43050	-	-	5e-39	At3g20630	UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14)	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.78395.1.S1_at	At2g43050	-	-	2e-5	At1g42470	patched family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.71733.1.S1_at	At2g43050	-	-	1e-52	At2g21470	SAE2 (SUMO-ACTIVATING ENZYME 2)	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.87079.1.S1_at	At2g43050	-	-	2e+0	At1g48700	iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.7528.2.S1_at	At2g43050	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.22932.1.S1_at	At2g43050	-	-	1e-28	At2g01060	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.79097.1.S1_at	At2g43050	-	-	3e-1	At3g44760	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.21619.1.S1_at	At2g43050	-	-	9e-80	At5g56280	CSN6A	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.58610.1.S1_at	At2g43050	-	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.76766.1.S1_at	At2g43050	-	-	2e-21	At2g33340	nucleotide binding / ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.6579.2.S1_at	At2g43050	-	-	2e-8	At5g28220	binding	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.3084.2.S1_a_at	At2g43050	-	-	1e+0	At2g24395	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage