CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.2263.1.A1_at

Gene name
Homology with Arabidopsis Similar to At2g43050: ATPMEPCRD (HF=7e-5)

Module size 6 genes

NF 0.55

%ile 73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.96 Zm.2263.1.A1_at AW330859 - - 7e-5 At2g43050 ATPMEPCRD O.I. H.G. S.X.
0.67 85.8 0.97 Zm.13797.2.A1_at AY105820.1 hypothetical protein LOC100279789 - 8e-4 At3g20770 EIN3 (ETHYLENE-INSENSITIVE3) O.I. H.G. S.X.
0.61 79.5 0.95 Zm.1404.1.A1_at AY108922.1 sugar transport protein 5 - 7e+0 At2g37585 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.50 65.7 0.97 Zm.12848.1.A1_at AW037142 hypothetical protein LOC100273763 - 5e-1 At1g18780 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.44 55.7 0.96 Zm.2925.3.A1_at CF002413 Ubiquitin - 4e-41 At2g47110 UBQ6 O.I. H.G. S.X.
0.19 12.8 0.96 Zm.17843.2.A1_at CD999046 hypothetical protein LOC100216964 - 6e-1 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.0 99.0 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8 98.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5 98.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1 98.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2 98.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9 98.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2 96.9 GSM320469 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g43050, orthologous to the query gene, Zm.2263.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.23 19.3 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. H.G. S.X.
0.67 81.6 At5g44440 834471 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. H.G. S.X.
0.61 76.7 At5g53980 835481 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. H.G. S.X.
0.50 65.3 At4g35720 829724 unknown protein F:unknown;P:unknown;C:unknown;PO O.I. H.G. S.X.
0.50 65.3 At5g57240 835830 ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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