Co-expression analysis

Gene ID	Zm.2245.1.A1_at
Gene name	pre-mRNA-splicing factor cwc15
Homology with Arabidopsis	Similar to At3g13200: EMB2769 (EMBRYO DEFECTIVE 2769) (HF=6e-7)
Module size	6 genes
NF	0.54
%ile	70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.96	Zm.2245.1.A1_at	CF625725	pre-mRNA-splicing factor cwc15	-	6e-7	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.6810.2.A1_a_at	CF631529	-	-	3e-1	At4g04632	ATP binding / protein kinase	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.3869.1.A1_at	CA399747	protein YIF1A	-	3e-21	At1g30890	integral membrane HRF1 family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.8401.2.S1_at	AI737075	-	-	1e+1	At5g48175	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.16935.1.S1_at	AY108819.1	hypothetical protein LOC100193218	-	2e+0	At4g22650	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.3895.2.A1_at	BM349822	chlorophyll a-b binding protein 4	-	2e-12	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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