Co-expression analysis

Gene ID	Zm.2236.1.S1_at
Gene name	peroxiredoxin bcp
Homology with Arabidopsis	Similar to At3g26060: ATPRX Q (HF=9e-9)
Module size	9 genes
NF	0.35
%ile	37.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	61.3	0.97	Zm.2236.1.S1_at	BQ538247	peroxiredoxin bcp	-	9e-9	At3g26060	ATPRX Q	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.17197.1.A1_at	CO531814	DNA binding protein	-	3e-3	At3g51960	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.2031.4.A1_at	BM341698	metallothionein-like protein type 2	-	1e-1	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.5112.1.A1_at	AI600906	-	-	2e-45	Atmg00480	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.14114.1.A1_at	AY104741.1	C-terminal peptide-binding protein 1	-	6e-3	At1g48580	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.13808.2.S1_at	CF631727	hypothetical protein LOC100279847	-	4e-7	At4g03240	FH (FRATAXIN HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.15177.1.A1_at	BM339919	-	-	5e+0	At5g45010	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.3773.1.A1_at	AY110209.1	Hypothetical protein LOC100193094	-	4e+0	At4g18620	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.4776.2.A1_at	CF026718	pyruvate dehydrogenase E1 component alpha subunit	-	1e-39	At1g59900	AT-E1 ALPHA	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	95.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.9	89.6	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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