Co-expression analysis

Gene ID	Zm.2227.1.A1_at
Gene name	hypothetical protein LOC100191593
Homology with Arabidopsis	Similar to At3g04720: PR4 (PATHOGENESIS-RELATED 4) (HF=6e-3)
Module size	11 genes
NF	0.12
%ile	7.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.86	Zm.2227.1.A1_at	BM381059	hypothetical protein LOC100191593	-	6e-3	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.91	Zm.1743.1.A1_at	BG840944	IAA19 - auxin-responsive Aux/IAA family member	-	2e-9	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.90	Zm.17834.1.S1_at	BM072688	hypothetical protein LOC100276988	-	4e-1	At2g28230	-	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.91	Zm.18382.1.S1_at	CO525381	barren stalk1	-	7e+0	At5g40981	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.90	Zm.17906.1.S1_at	CK786837	-	-	4e-23	At2g24330	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.92	Zm.18250.1.A1_at	CN844932	-	-	2e-3	At5g15850	COL1 (constans-like 1)	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.91	Zm.10233.1.A1_at	BM341551	-	-	3e-29	At3g55410	2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.90	ZmAffx.951.1.A1_at	AI833422	-	-	8e-1	At1g60970	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.92	Zm.14602.1.A1_at	CB380496	-	-	4e+0	At4g23720	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.92	Zm.18331.1.A1_at	AI770358	-	-	1e+0	At5g64667	IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.90	Zm.2014.1.S1_at	BE509884	-	-	3e-1	At1g49400	emb1129 (embryo defective 1129)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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