Co-expression analysis

Gene ID Zm.221.1.A1_at
Gene name calcium-dependent protein kinase
Homology with ArabidopsisSimilar to At3g20410: CPK9 (calmodulin-domain protein kinase 9) (HF=4e-25)
Module size 6 genes
NF 0.72
%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.99Zm.221.1.A1_atU28376.1calcium-dependent protein kinase-4e-25At3g20410CPK9 (calmodulin-domain protein kinase 9)O.I.H.G.S.X.
0.8094.00.99Zm.6248.1.A1_atCB833922--3e+0At5g07890myosin heavy chain-relatedO.I.H.G.S.X.
0.7792.10.99Zm.6246.1.S1_a_atCB042879hypothetical protein LOC100274295 /// hypothetical protein LOC100277252-1e-5At2g22080unknown proteinO.I.H.G.S.X.
0.7389.90.99Zm.16805.3.S1_x_atBM381902basic endochitinase C-2e-10At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.6077.80.99Zm.2142.1.A1_atCK369102hypothetical protein LOC100191429-1e-8At2g42880ATMPK20O.I.H.G.S.X.
0.5369.10.99Zm.4061.1.S1_atAI834355--3e+0At3g25030zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.99Zm.3937.1.S1_a_atBQ294219hypothetical protein LOC100276728-6e-4At4g25680unknown proteinO.I.H.G.S.X.
0.6381.10.99Zm.14413.1.A1_atCF052725hypothetical protein LOC100279243-1e-21At5g10270CDKCO.I.H.G.S.X.
0.5775.10.99Zm.14497.8.A1_s_atCO52746960S ribosomal protein L27 /// 60S ribosomal protein L27-2e-6At3g2223060S ribosomal protein L27 (RPL27B)O.I.H.G.S.X.
0.5674.40.97Zm.14529.1.S1_atAJ437283.1embryo-sac basal-endosperm layer embryo-surrounding-region-2e+0At2g11778unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.7034.2.S1_atAI770602--1e+0At4g18080unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.2141.1.A1_atBM347927--2e-7At1g73980phosphoribulokinase/uridine kinase family proteinO.I.H.G.S.X.
0.5065.70.99Zm.7126.2.S1_atAY110592.1--2e-9At3g51460RHD4 (ROOT HAIR DEFECTIVE4)O.I.H.G.S.X.
0.4861.30.98Zm.16349.1.S1_atCD973880hypothetical protein LOC100272608-4e+0At5g03415DPBO.I.H.G.S.X.
0.4658.40.99Zm.5356.1.A1_s_atAI619132--2e-2At5g55860unknown proteinO.I.H.G.S.X.
0.4658.40.99Zm.16527.1.A1_s_atCF637778hypothetical protein LOC100277800-5e-13At1g03260-O.I.H.G.S.X.
0.4455.70.99Zm.14703.2.A1_a_atCF634914hypothetical protein LOC100194060-3e-7At5g66650unknown proteinO.I.H.G.S.X.
0.4455.70.99Zm.3940.1.S1_atAY280630.1single myb histone 5-3e-3At1g49950DNA-binding protein, putativeO.I.H.G.S.X.
0.4455.70.97Zm.6616.1.A1_atCF003465--8e-1At5g66300NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)O.I.H.G.S.X.
0.4455.70.99Zm.7121.1.A1_atAY104050.1hypothetical protein LOC100191328-2e-5At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.
0.4352.80.99Zm.3939.1.A1_atAY111051.1hypothetical protein LOC100273567-1e+0At3g44280unknown proteinO.I.H.G.S.X.
0.4352.80.99Zm.7034.2.A1_a_atAI770602hypothetical protein LOC100279884-1e+0At4g18080unknown proteinO.I.H.G.S.X.
0.4251.30.99Zm.2200.1.A1_atBG841101--6e+0At4g35785nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.4048.50.98Zm.3198.2.A1_a_atCN844169ubiquitin-conjugating enzyme E2-17 kDa 9 /// ubiquitin-conjugating enzyme E2-17 kDa 9-5e-78At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.4048.50.99Zm.12687.1.S1_x_atCO520828auxin efflux carrier component 1c-2e-7At5g57090EIR1 (ETHYLENE INSENSITIVE ROOT 1)O.I.H.G.S.X.
0.4048.50.99Zm.6683.1.S1_atAI372385--4e-1At4g21970unknown proteinO.I.H.G.S.X.
0.4048.50.99Zm.393.1.S1_atU41466.1glossy15-3e-7At5g67180AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4048.50.99Zm.3938.1.A1_atCB350990--2e+0At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.
0.4048.50.99Zm.6614.1.A1_atCO533019coronatine-insensitive protein 1-1e+0At2g26030F-box family proteinO.I.H.G.S.X.
0.3945.60.99Zm.353.1.S1_atCF636600profilin-2e-12At4g29350PFN2 (PROFILIN 2)O.I.H.G.S.X.
0.3844.20.99Zm.12691.1.A1_atBU645208zinc finger C-x8-C-x5-C-x3-H type family protein-2e+0At4g16990RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)O.I.H.G.S.X.
0.3844.20.99Zm.2979.1.S1_atBG841486trafficking protein particle complex protein 2-2e-12At1g80500-O.I.H.G.S.X.
0.3742.30.99Zm.12225.1.A1_atCA403034DIP1-2e+0At3g14340unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.12688.1.S1_atCF625305hypothetical protein LOC100279814-2e-2At2g25970KH domain-containing proteinO.I.H.G.S.X.
0.3641.30.99Zm.6787.1.A1_atAF277454.1UMP synthase-2e-17At3g54470uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)O.I.H.G.S.X.
0.3641.30.99Zm.581.1.S1_atAF237945.1HCF106C precursor protein-5e-1At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.3641.30.99Zm.6079.1.S1_atBM268227ribosomal protein L25-1e-53At2g39460RPL23AA (RIBOSOMAL PROTEIN L23AA)O.I.H.G.S.X.
0.3538.90.99Zm.1269.1.A1_atBM350862--5e+0At5g53980ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)O.I.H.G.S.X.
0.3538.90.99Zm.12690.1.S1_atCA831966hypothetical protein LOC100191357-5e-23At4g12790ATP-binding family proteinO.I.H.G.S.X.
0.3538.90.99Zm.15933.1.A1_atCA400453--2e-22At3g61130GAUT1 (GALACTURONOSYLTRANSFERASE 1)O.I.H.G.S.X.
0.3538.90.99Zm.2978.1.S1_atCD981283peptidyl-tRNA hydrolase-4e-10At1g18440peptidyl-tRNA hydrolase family proteinO.I.H.G.S.X.
0.3437.20.99Zm.3936.1.S1_atAY112116.1hypothetical protein LOC100275702-1e+0At3g19900unknown proteinO.I.H.G.S.X.
0.3437.20.99Zm.14415.1.A1_a_atBM382357auxin-repressed 12.5 kDa protein-2e-9At2g33830dormancy/auxin associated family proteinO.I.H.G.S.X.
0.3336.00.99Zm.7012.12.S1_a_atAI691869Ribosomal protein S8-4e+0At5g13220JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)O.I.H.G.S.X.
0.3336.00.99Zm.16532.4.S1_x_atBI42368260S ribosomal protein L18a-7e-68At2g3448060S ribosomal protein L18A (RPL18aB)O.I.H.G.S.X.
0.3233.40.99Zm.3751.1.A1_atAW330700serine esterase family protein-2e+0At4g05230ubiquitin family proteinO.I.H.G.S.X.
0.3233.40.98Zm.1691.1.S1_a_atAY108152.1hypothetical protein LOC100191436-2e-37At2g30390FC2 (FERROCHELATASE 2)O.I.H.G.S.X.
0.3233.40.99Zm.16590.3.A1_atAY104237.1DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide-2e-34At5g51940NRPB6AO.I.H.G.S.X.
0.3233.40.99Zm.3929.1.S1_atCO534253hypothetical protein LOC100274493-7e-1At1g78680ATGGH2 (gamma-glutamyl hydrolase 2)O.I.H.G.S.X.
0.3131.60.98Zm.17931.1.A1_atCK827676hydrogen-transporting ATP synthase, rotational mechanism-5e+0At4g34265unknown proteinO.I.H.G.S.X.
0.3131.60.99Zm.7121.2.S1_atAF457960.1--5e-6At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.
0.3131.60.99Zm.15932.1.A1_atAJ577238.1beta3-glucuronyltransferase-8e-1At5g28610-O.I.H.G.S.X.
0.3131.60.99Zm.16527.1.A1_atCF637778hypothetical protein LOC100277800-5e-13At1g03260-O.I.H.G.S.X.
0.3029.80.99Zm.12693.1.A1_atBU499844NADH-ubiquinone oxidoreductase 10.5 kDa subunit-2e-8At5g47890NADH-ubiquinone oxidoreductase B8 subunit, putativeO.I.H.G.S.X.
0.3029.80.99Zm.714.1.A1_atU66105.1phospholipid transfer protein-6e+0At3g48490unknown proteinO.I.H.G.S.X.
0.3029.80.97Zm.8840.1.A1_atBM075848--2e-1At1g43610NLI interacting factor (NIF) family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.291.3GSM290555CCR mutant M1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO
2.291.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.190.8GSM290553WS1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO
2.090.2GSM290554WS2 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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