Co-expression analysis

Gene ID	Zm.221.1.A1_at
Gene name	calcium-dependent protein kinase
Homology with Arabidopsis	Similar to At3g20410: CPK9 (calmodulin-domain protein kinase 9) (HF=4e-25)
Module size	6 genes
NF	0.72
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.99	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.99	Zm.6248.1.A1_at	CB833922	-	-	3e+0	At5g07890	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.99	Zm.6246.1.S1_a_at	CB042879	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.16805.3.S1_x_at	BM381902	basic endochitinase C	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.2142.1.A1_at	CK369102	hypothetical protein LOC100191429	-	1e-8	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	Zm.4061.1.S1_at	AI834355	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.2	91.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.0	90.2	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

Inter-species module comparison

A co-expression module including the grape gene, 1621727_s_at, orthologous to the query gene, Zm.221.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.2	1621727_s_at	At3g20410	similar to calmodulin-like domain protein kinase isoenzyme gamma	-	3e-14	At4g21940	CPK15	O.I.	H.G.	S.X.	Please select
0.60	81.9	1621933_at	At3g20410	hypothetical protein LOC100249852	-	5e+0	At3g17090	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	1620233_at	At3g20410	-	-	9e-1	At3g52440	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1607818_at	At3g20410	hypothetical protein LOC100246164	-	2e-24	At2g30410	KIS (KIESEL)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1616267_at	At3g20410	-	-	1e-118	At5g40870	AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1616170_at	At3g20410	hypothetical protein LOC100242801	-	1e-84	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1619979_at	At3g20410	hypothetical protein LOC100243832	-	3e-1	At4g25280	adenylate kinase family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	1615508_s_at	At3g20410	similar to NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III	-	2e+0	At2g22426	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1619619_at	At3g20410	hypothetical protein LOC100253879	-	5e-4	At3g04930	transcription regulator	O.I.	H.G.	S.X.	Please select
0.39	54.9	1615836_at	At3g20410	hypothetical protein LOC100258649	-	5e-9	At5g59160	TOPP2	O.I.	H.G.	S.X.	Please select
0.34	46.8	1618999_at	At3g20410	hypothetical protein LOC100262446	-	1e-21	At4g02030	-	O.I.	H.G.	S.X.	Please select
0.34	46.8	1621196_at	At3g20410	hypothetical protein LOC100250526	-	3e-10	At2g45260	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1616751_at	At3g20410	hypothetical protein LOC100268151	-	6e+0	At5g15790	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1616177_at	At3g20410	similar to 3-methyladenine DNA glycosylase, putative; 31680-30045	-	2e+1	At5g42630	ATS (ABERRANT TESTA SHAPE)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1616044_at	At3g20410	similar to mRNA capping enzyme family protein	-	7e-13	At3g09100	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1606490_at	At3g20410	similar to salt tolerance protein 5-like protein	-	5e-24	At5g53400	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1618286_at	At3g20410	hypothetical protein LOC100248027	-	5e-27	At3g14230	RAP2.2	O.I.	H.G.	S.X.	Please select
0.30	39.4	1621706_at	At3g20410	hypothetical protein LOC100242423	-	2e-11	At2g35050	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1613027_at	At3g20410	hypothetical protein LOC100264294	-	5e+0	At2g36360	kelch repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1610686_at	At3g20410	similar to putative p115-like protein	-	2e+0	At1g09950	transcription factor-related	O.I.	H.G.	S.X.	Please select
0.29	37.7	1609054_s_at	At3g20410	hypothetical protein LOC100254514	-	1e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1622722_at	At3g20410	-	-	4e-1	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1615717_s_at	At3g20410	hypothetical protein LOC100252829	-	7e-71	At1g04760	ATVAMP726	O.I.	H.G.	S.X.	Please select
0.27	34.0	1616971_a_at	At3g20410	hypothetical protein LOC100263708	-	4e-119	At1g60490	ATVPS34	O.I.	H.G.	S.X.	Please select
0.26	32.0	1619712_at	At3g20410	hypothetical protein LOC100253333	-	7e-40	At2g22310	ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1613058_a_at	At3g20410	hypothetical protein LOC100250363	-	9e-9	At4g27000	ATRBP45C	O.I.	H.G.	S.X.	Please select
0.26	32.0	1622788_at	At3g20410	hypothetical protein LOC100262286	-	1e-1	At3g15355	UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1614904_at	At3g20410	hypothetical protein LOC100250638	-	4e-16	At3g61140	FUS6 (FUSCA 6)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1610904_at	At3g20410	hypothetical protein LOC100251772	-	1e-26	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select
0.23	27.5	1620740_s_at	At3g20410	hypothetical protein LOC100250299	-	5e-36	At5g66680	DGL1	O.I.	H.G.	S.X.	Please select
0.22	25.6	1612891_at	At3g20410	hypothetical protein LOC100260359	-	9e-15	At3g12680	HUA1 (ENHANCER OF AG-4 1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1608677_at	At3g20410	hypothetical protein LOC100258930	-	3e-22	At3g19130	ATRBP47B (RNA-binding protein 47B)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1618381_at	At3g20410	hypothetical protein LOC100265039	-	1e+0	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	O.I.	H.G.	S.X.	Please select
0.12	12.1	1618270_at	At3g20410	hypothetical protein LOC100263081	-	2e-2	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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