Co-expression analysis

Gene ID Zm.221.1.A1_at
Gene name calcium-dependent protein kinase
Homology with ArabidopsisSimilar to At3g20410: CPK9 (calmodulin-domain protein kinase 9) (HF=4e-25)
Module size 6 genes
NF 0.72
%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.99Zm.221.1.A1_atU28376.1calcium-dependent protein kinase-4e-25At3g20410CPK9 (calmodulin-domain protein kinase 9)O.I.H.G.S.X.
0.8094.00.99Zm.6248.1.A1_atCB833922--3e+0At5g07890myosin heavy chain-relatedO.I.H.G.S.X.
0.7792.10.99Zm.6246.1.S1_a_atCB042879hypothetical protein LOC100274295 /// hypothetical protein LOC100277252-1e-5At2g22080unknown proteinO.I.H.G.S.X.
0.7389.90.99Zm.16805.3.S1_x_atBM381902basic endochitinase C-2e-10At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.6077.80.99Zm.2142.1.A1_atCK369102hypothetical protein LOC100191429-1e-8At2g42880ATMPK20O.I.H.G.S.X.
0.5369.10.99Zm.4061.1.S1_atAI834355--3e+0At3g25030zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.291.3GSM290555CCR mutant M1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO
2.291.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.190.8GSM290553WS1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO
2.090.2GSM290554WS2 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0515100, orthologous to the query gene, Zm.221.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.2Os07g0515100At3g20410-Calcium-dependent protein kinase, isoform 2 (EC2.7.1.-) (CDPK 2)2e-32At1g50700CPK33O.I.H.G.S.X.
0.5068.0Os03g0275500At3g20410-Epsin, N-terminal domain containing protein1e-3At2g25430epsin N-terminal homology (ENTH) domain-containing proteinO.I.H.G.S.X.
0.4660.9Os01g0622600At3g20410-Calcium-dependent protein kinase2e-23At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.1915.1Os05g0135800At3g20410-Pto kinase interactor 12e-66At3g62220serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.149.3Os01g0556400At3g20410-Heat shock protein DnaJ family protein4e-3At5g05750DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.127.2Os03g0646900At3g20410-Serine/threonine protein phosphatase BSL2 (EC3.1.3.16) (BSU1-like protein 2)1e-4At2g27210kelch repeat-containing serine/threonine phosphoesterase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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