Co-expression analysis

Gene ID	Zm.221.1.A1_at
Gene name	calcium-dependent protein kinase
Homology with Arabidopsis	Similar to At3g20410: CPK9 (calmodulin-domain protein kinase 9) (HF=4e-25)
Module size	6 genes
NF	0.72
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.99	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.99	Zm.6248.1.A1_at	CB833922	-	-	3e+0	At5g07890	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.99	Zm.6246.1.S1_a_at	CB042879	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.16805.3.S1_x_at	BM381902	basic endochitinase C	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.2142.1.A1_at	CK369102	hypothetical protein LOC100191429	-	1e-8	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	Zm.4061.1.S1_at	AI834355	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.2	91.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.0	90.2	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.80245.1.S1_at, orthologous to the query gene, Zm.221.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	81.8	GmaAffx.80245.1.S1_at	At3g20410	-	-	9e-23	At4g04720	CPK21	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.66000.1.S1_at	At3g20410	-	-	5e-2	At5g13330	Rap2.6L (related to AP2 6L)	O.I.	H.G.	S.X.	Please select
0.60	80.7	Gma.16337.3.S1_at	At3g20410	-	-	1e-2	At3g15180	proteasome-related	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.78747.1.S1_at	At3g20410	-	-	2e+1	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.28119.1.S1_at	At3g20410	-	-	5e-2	At2g24590	splicing factor, putative	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.80245.2.S1_at	At3g20410	-	-	6e-2	At4g05400	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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