Co-expression analysis

Gene ID Zm.2171.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g74970: RPS9 (RIBOSOMAL PROTEIN S9) (HF=1e+0)
Module size 6 genes
NF 0.23
%ile 17.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.87Zm.2171.1.A1_atBG841205--1e+0At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.6179.50.91Zm.3422.2.A1_atAY104377.1hypothetical protein LOC100191154-1e-20At2g05840PAA2 (20S PROTEASOME SUBUNIT PAA2)O.I.H.G.S.X.
0.4048.50.89Zm.8992.2.A1_atAW066740hypothetical protein LOC100191900-2e-25At1g79530GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)O.I.H.G.S.X.
0.169.40.94Zm.8336.1.S1_atAB061270.1NAS1 protein-4e+0At2g44360unknown proteinO.I.H.G.S.X.
0.115.30.89Zm.9383.1.A1_atBM268466--8e+0At3g44935unknown proteinO.I.H.G.S.X.
0.115.30.91Zm.10121.1.A1_atBM379087peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-1e-28At1g26550peptidyl-prolyl cis-trans isomerase PPIC-type family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.2GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
4.996.7GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
4.496.2GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
4.496.2GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.595.1GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
2.893.5GSM320443protocol: mRNA - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM206332Lower pulvinus 15 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
2.692.9GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO
2.391.7GSM206327Upper pulvinus 30 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
2.190.8GSM206314Upper pulvinus 15 min total RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage