Co-expression analysis

Gene ID Zm.2157.5.A1_x_at
Gene name ribosomal protein S11
Homology with ArabidopsisSimilar to At5g23740: RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) (HF=2e-35)
Module size 33 genes
NF 0.33
%ile 32.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9097.00.94Zm.2157.5.A1_x_atCK348105ribosomal protein S11-2e-35At5g23740RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)O.I.H.G.S.X.
0.4759.90.95Zm.5155.1.S1_atCD433333hypothetical protein LOC100193357-7e-20At5g27740EMB2775 (EMBRYO DEFECTIVE 2775)O.I.H.G.S.X.
0.4556.40.96Zm.14133.1.A1_atCF633639gibberellin receptor GID1L2-7e+0At4g03113unknown proteinO.I.H.G.S.X.
0.4455.70.95Zm.15722.2.A1_atCA404232hypothetical protein LOC100273877-2e+0At3g06110MKP2 (MAPK PHOSPHATASE 2)O.I.H.G.S.X.
0.4251.30.96Zm.19173.1.A1_atCO524394--5e+0At4g33625unknown proteinO.I.H.G.S.X.
0.4048.50.95Zm.3405.1.A1_atAI737775--4e-4At2g30940protein kinase family proteinO.I.H.G.S.X.
0.4048.50.95ZmAffx.697.1.A1_atAI737808--3e+0At4g27745-O.I.H.G.S.X.
0.4048.50.96Zm.4304.1.S1_atAI834719--1e-3At3g18600DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.4048.50.96Zm.3263.1.A1_atBG842806nudix hydrolase 13-2e+0At3g52525OFP6 (OVATE FAMILY PROTEIN 6)O.I.H.G.S.X.
0.3844.20.96Zm.18504.1.A1_atCF626348hypothetical protein LOC100279335-2e+0At4g12490protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3844.20.95Zm.3515.1.A1_atCA404890hypothetical protein LOC100194050-1e-6At2g43180catalyticO.I.H.G.S.X.
0.3742.30.96Zm.10293.1.S1_atAY110737.1light-inducible protein CPRF-2-6e-1At3g50651unknown proteinO.I.H.G.S.X.
0.3641.30.96Zm.2660.1.A1_atAW066755hypothetical protein LOC100194122-3e-1At3g19180ARC6HO.I.H.G.S.X.
0.3233.40.95Zm.17248.3.A1_a_atAW057073hypothetical protein LOC100280404-7e-11At5g37510EMB1467 (embryo defective 1467)O.I.H.G.S.X.
0.3233.40.96Zm.5462.1.A1_atAW055416--7e-1At1g08125Expressed proteinO.I.H.G.S.X.
0.3233.40.96Zm.2541.1.A1_atCF629797cortical cell-delineating protein-2e+0At1g12090ELP (EXTENSIN-LIKE PROTEIN)O.I.H.G.S.X.
0.3131.60.95Zm.6763.3.S1_atAY105013.1--1e+0At3g59845NADP-dependent oxidoreductase, putativeO.I.H.G.S.X.
0.3029.80.95Zm.858.1.A1_atBM073310hypothetical protein LOC100216691-2e+0At4g12350MYB42 (myb domain protein 42)O.I.H.G.S.X.
0.2928.10.96Zm.12342.1.A1_atCD440814DNA binding protein-5e-1At4g16700PSD1 (phosphatidylserine decarboxylase 1)O.I.H.G.S.X.
0.2928.10.95Zm.13869.1.S1_x_atAF099436.1R2R3MYB-domain protein-4e+0At2g04910glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.2928.10.96Zm.17628.1.S1_atCN845468--6e-17At2g34560katanin, putativeO.I.H.G.S.X.
0.2928.10.95Zm.292.1.S1_atL46397.1MADS box protein-2e-7At3g61120AGL13 (AGAMOUS-LIKE 13)O.I.H.G.S.X.
0.2928.10.95Zm.5789.10.A1_x_atAI737302hypothetical protein LOC100192516-6e-14At1g43170ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)O.I.H.G.S.X.
0.2928.10.96Zm.13193.1.A1_atCD991429--4e-6At4g14990unknown proteinO.I.H.G.S.X.
0.2828.10.96Zm.7463.1.A1_atBM078503hypothetical protein LOC100276250-2e+0At1g21090hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2828.10.95Zm.11806.1.S1_atBM380898thylakoid lumenal 16.5 kDa protein-6e+0At5g42146unknown proteinO.I.H.G.S.X.
0.2622.70.97ZmAffx.1118.2.A1_atAW267189--8e-1At2g27360lipase, putativeO.I.H.G.S.X.
0.2521.30.97Zm.17516.1.S1_atCF623514hypothetical protein LOC100216611-3e-12At5g63650SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)O.I.H.G.S.X.
0.2318.60.97Zm.15705.1.A1_atCD440189--1e-4At4g38270GAUT3 (Galacturonosyltransferase 3)O.I.H.G.S.X.
0.2216.90.96Zm.4137.1.S1_atAI855128--2e+0At4g21330DYT1 (DYSFUNCTIONAL TAPETUM 1)O.I.H.G.S.X.
0.2115.50.97Zm.6228.1.A1_atAI739920--1e+0At1g64370unknown proteinO.I.H.G.S.X.
0.1912.80.96Zm.5965.1.A1_atAI665966Hypothetical protein LOC100192560-2e+0At5g19140AILP1O.I.H.G.S.X.
0.125.90.97Zm.9814.1.A1_atBM351590--4e+0At5g26840unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM205371Mo17xB73 13 DAP endosperm tissue biological replicate 2GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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