Co-expression analysis

Gene ID Zm.2134.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g41780: unknown protein (HF=9e-2)
Module size 8 genes
NF 0.53
%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.97Zm.2134.1.A1_atAI734434--9e-2At2g41780unknown proteinO.I.H.G.S.X.
0.5775.10.98Zm.17497.1.A1_atBG266429hypothetical protein LOC100273930-3e+0Atmg00140-O.I.H.G.S.X.
0.5674.40.97Zm.749.1.S1_atAY291061.1photosystem II subunit PsbS1-8e-7At1g44575NPQ4 (NONPHOTOCHEMICAL QUENCHING)O.I.H.G.S.X.
0.5065.70.97Zm.13681.1.S1_atAY106895.1hypothetical protein LOC100191679-4e-10At1g12370PHR1 (PHOTOLYASE 1)O.I.H.G.S.X.
0.4759.90.98Zm.6049.3.A1_a_atAI734480phosphatidylinositol transporter/ transporter-3e-3At1g76640calmodulin-related protein, putativeO.I.H.G.S.X.
0.4251.30.98Zm.18446.1.A1_atCO518758--3e-2At1g29800phosphoinositide binding / zinc ion bindingO.I.H.G.S.X.
0.4048.50.97Zm.13543.1.A1_atAY108273.1--2e-22At1g63160replication factor C 40 kDa, putativeO.I.H.G.S.X.
0.3844.20.98Zm.6146.1.A1_atCD989568brassinosteroid biosynthesis-like protein-1e-40At3g19820DWF1 (DWARF 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.599.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.398.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.692.9GSM320458protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage