Co-expression analysis

Gene ID Zm.2111.1.A1_at
Gene name stem 28 kDa glycoprotein
Homology with ArabidopsisSimilar to At5g47680: - (HF=9e+0)
Module size 10 genes
NF 0.40
%ile 45.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.95Zm.2111.1.A1_atBM337757stem 28 kDa glycoprotein-9e+0At5g47680-O.I.H.G.S.X.
0.6279.80.95Zm.14611.1.S1_atAY156979.1nitrilase 1-2e-14At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.4556.40.96Zm.6340.1.A1_atAI691460--1e+0At4g39730lipid-associated family proteinO.I.H.G.S.X.
0.3641.30.97ZmAffx.457.1.S1_atAI677203--3e+0At4g20470unknown proteinO.I.H.G.S.X.
0.3641.30.95Zm.860.1.A1_atAI600859--1e+0At1g32980subtilisin-like serine protease-relatedO.I.H.G.S.X.
0.3538.90.96Zm.5088.1.A1_atAI600781--7e+0At5g07020proline-rich family proteinO.I.H.G.S.X.
0.3538.90.96Zm.16016.1.A1_atCO527167hypothetical protein LOC100272987-7e-25At5g42090-O.I.H.G.S.X.
0.3029.80.96ZmAffx.1192.1.A1_atBE025301--6e+0At3g53650histone H2B, putativeO.I.H.G.S.X.
0.2928.10.97Zm.11697.1.A1_atCF272745--1e+0At4g04620ATG8B (autophagy 8b)O.I.H.G.S.X.
0.2521.30.96Zm.4599.1.A1_atBM078509hypothetical protein LOC100192691-4e+0At3g22183unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.398.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM253249ZM_12h_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.697.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM253246ZM_12h_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
4.896.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM323172Zm_SG200Dpep1_24hpi_IIIGSE12892Maize gene expression during infection with Ustilago maydis strain SG200Dpep1Link to GEO
2.893.5GSM206316Upper pulvinus 60 min total RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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