Co-expression analysis

Gene ID	Zm.2059.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g58610: ketol-acid reductoisomerase (HF=1e-86)
Module size	6 genes
NF	0.63
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.95	Zm.2059.1.S1_at	AI746127	-	-	1e-86	At3g58610	ketol-acid reductoisomerase	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.16537.3.S1_at	CA404068	hypothetical protein LOC100273170	-	2e-22	At3g04770	RPSAb (40S ribosomal protein SA B)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.94	Zm.17980.1.A1_at	CK828030	-	-	7e-1	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.94	Zm.9182.1.A1_s_at	BM267124	hypothetical protein LOC100278830	-	1e+0	At2g05803	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.18708.1.A1_at	CO523461	-	-	4e-1	At2g36485	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.19277.1.A1_at	CO533311	hypothetical protein LOC100273292	-	2e-3	At1g18010	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.4	92.2	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.3	91.7	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.3	91.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.1	90.8	GSM205427	Mo17xB73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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