Co-expression analysis

Gene ID	Zm.2031.1.A1_x_at
Gene name	csu1120 protein
Homology with Arabidopsis	Similar to At3g50550: unknown protein (HF=5e-4)
Module size	6 genes
NF	0.26
%ile	21.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.85	Zm.2031.1.A1_x_at	AY103664.1	csu1120 protein	-	5e-4	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.87	ZmAffx.1203.1.S1_at	BE128869	lipase	-	3e-9	At1g10740	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.89	Zm.12557.1.A1_at	AI691470	-	-	3e+0	At3g01450	binding	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.91	ZmAffx.1213.1.S1_at	BU051439	-	-	2e-1	At3g10190	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.89	Zm.7369.1.A1_at	CD976747	integral membrane protein like	-	6e-3	At1g34020	transporter-related	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.89	Zm.19318.1.S1_at	CO532290	CMO protein	-	8e-1	At4g29890	choline monooxygenase, putative (CMO-like)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.7	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1621823_at, orthologous to the query gene, Zm.2031.1.A1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1621823_at	At3g50550	hypothetical protein LOC100253216	-	4e+0	At5g66000	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	1613035_a_at	At3g50550	-	-	3e-10	At3g01130	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	1608156_at	At3g50550	hypothetical protein LOC100246241	-	7e-3	At4g24040	TRE1 (TREHALASE 1)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1607758_at	At3g50550	hypothetical protein LOC100267502	-	3e-20	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1611961_at	At3g50550	hypothetical protein LOC100242919	-	2e-9	At5g51620	-	O.I.	H.G.	S.X.	Please select
0.01	2.1	1621841_at	At3g50550	hypothetical protein LOC100258708	-	9e-3	Atcg01000	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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