Co-expression analysis

Gene ID	Zm.2031.1.A1_x_at
Gene name	csu1120 protein
Homology with Arabidopsis	Similar to At3g50550: unknown protein (HF=5e-4)
Module size	6 genes
NF	0.26
%ile	21.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.85	Zm.2031.1.A1_x_at	AY103664.1	csu1120 protein	-	5e-4	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.87	ZmAffx.1203.1.S1_at	BE128869	lipase	-	3e-9	At1g10740	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.89	Zm.12557.1.A1_at	AI691470	-	-	3e+0	At3g01450	binding	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.91	ZmAffx.1213.1.S1_at	BU051439	-	-	2e-1	At3g10190	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.89	Zm.7369.1.A1_at	CD976747	integral membrane protein like	-	6e-3	At1g34020	transporter-related	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.89	Zm.19318.1.S1_at	CO532290	CMO protein	-	8e-1	At4g29890	choline monooxygenase, putative (CMO-like)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.7	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig616_at, orthologous to the query gene, Zm.2031.1.A1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.37	47.9	Contig616_at	At3g50550	-	-	4e+0	At3g19160	ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES)	O.I.	H.G.	S.X.	Please select
0.22	24.2	HF25F14r_s_at	At3g50550	-	-	7e+0	At5g44850	-	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig3791_at	At3g50550	-	-	1e-8	At5g66530	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig5632_at	At3g50550	-	-	3e-3	At5g41430	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig2881_s_at	At3g50550	-	-	1e-6	At4g27500	PPI1 (PROTON PUMP INTERACTOR 1)	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig10565_at	At3g50550	-	-	6e-1	At5g09600	SDH3-1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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