| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|
0.53 | 69.1 | 0.96 | Zm.7076.1.S1_at | BM334411 | - | - | 6e-19 | At3g21700 | SGP2 | O.I. | H.G. | S.X. | | 0.50 | 65.7 | 0.97 | Zm.2895.8.S1_a_at | AI677411 | - | - | 8e-41 | At4g14320 | 60S ribosomal protein L36a/L44 (RPL36aB) | O.I. | H.G. | S.X. | | 0.50 | 65.7 | 0.97 | Zm.10280.1.S1_at | CO529528 | hypothetical protein LOC100216803 | - | 5e-2 | At4g13010 | oxidoreductase, zinc-binding dehydrogenase family protein | O.I. | H.G. | S.X. | | 0.46 | 58.4 | 0.96 | Zm.1043.1.S1_at | BM266900 | - | - | 6e-23 | At5g15920 | structural maintenance of chromosomes (SMC) family protein (MSS2) | O.I. | H.G. | S.X. | | 0.46 | 58.4 | 0.97 | Zm.9878.1.A1_at | BM347591 | hypothetical protein LOC100191208 | - | 5e+0 | At3g17910 | SURF1 (SURFEIT 1) | O.I. | H.G. | S.X. | | 0.44 | 55.7 | 0.97 | Zm.14069.1.S1_a_at | AI734511 | hypothetical protein LOC100274401 | - | 2e-7 | At1g49600 | ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a) | O.I. | H.G. | S.X. | | 0.44 | 55.7 | 0.97 | Zm.4767.2.S1_at | CA830816 | glutamyl-tRNA synthetase, cytoplasmic | - | 2e-5 | At5g26710 | glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative | O.I. | H.G. | S.X. | | 0.44 | 55.7 | 0.98 | Zm.9023.1.A1_at | AY109177.1 | - | - | 4e-14 | At4g02480 | AAA-type ATPase family protein | O.I. | H.G. | S.X. | | 0.42 | 51.3 | 0.97 | Zm.5717.1.A1_at | AY108572.1 | malate dehydrogenase, glyoxysomal | - | 9e-49 | At5g09660 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2) | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.98 | Zm.14433.1.S1_at | CA401946 | hypothetical protein LOC100192707 | - | 2e+0 | At5g02310 | PRT6 (PROTEOLYSIS 6) | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.98 | Zm.12713.1.S1_at | BI478939 | - | - | 1e-24 | At3g19170 | ATPREP1 (PRESEQUENCE PROTEASE 1) | O.I. | H.G. | S.X. | | 0.36 | 41.3 | 0.98 | Zm.5207.1.S1_at | AY107278.1 | hypothetical protein LOC100192596 | - | 5e-23 | At4g03120 | proline-rich family protein | O.I. | H.G. | S.X. | | 0.35 | 38.9 | 0.96 | Zm.6353.1.S1_a_at | CA399677 | heat shock protein STI | - | 2e-14 | At1g62740 | stress-inducible protein, putative | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.96 | ZmAffx.221.1.S1_at | AI670229 | - | - | 8e-1 | At5g64670 | ribosomal protein L15 family protein | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.97 | Zm.6547.1.A1_at | AY104394.1 | hypothetical protein LOC100272991 | - | 2e+0 | At1g72020 | unknown protein | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.97 | Zm.3900.2.A1_at | BM267197 | hypothetical protein LOC100191188 | - | 1e-17 | At3g59580 | RWP-RK domain-containing protein | O.I. | H.G. | S.X. | | 0.33 | 36.0 | 0.97 | Zm.19266.1.A1_at | CO521373 | - | - | 2e+1 | At5g20570 | RBX1 (RING-BOX 1) | O.I. | H.G. | S.X. | | 0.31 | 31.6 | 0.97 | Zm.5545.1.A1_at | AI691787 | - | - | 5e+0 | At4g23720 | unknown protein | O.I. | H.G. | S.X. | | 0.31 | 31.6 | 0.96 | Zm.12000.1.A1_at | BM382537 | - | - | 1e+1 | At5g35680 | eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative | O.I. | H.G. | S.X. | | 0.31 | 31.6 | 0.98 | Zm.4898.1.S1_at | BI417088 | hypothetical protein LOC100279412 | - | 6e-25 | At4g16143 | IMPA-2 (IMPORTIN ALPHA ISOFORM 2) | O.I. | H.G. | S.X. | | 0.30 | 29.8 | 0.97 | Zm.5938.2.A1_a_at | AI665871 | - | - | 8e-1 | At4g08390 | SAPX (STROMAL ASCORBATE PEROXIDASE) | O.I. | H.G. | S.X. | | 0.30 | 29.8 | 0.97 | Zm.4441.1.A1_at | AW066817 | - | - | 1e-1 | At4g05340 | ATP binding | O.I. | H.G. | S.X. | | 0.30 | 29.8 | 0.98 | Zm.4182.1.S1_at | CF631780 | hypothetical protein LOC100276027 | - | 1e-4 | At5g54855 | pollen Ole e 1 allergen and extensin family protein | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.97 | Zm.17598.1.S1_at | CK370536 | - | - | 6e-1 | At3g26740 | CCL (CCR-LIKE) | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.97 | Zm.14692.1.A1_at | BQ539260 | - | - | 5e+0 | At1g09195 | - | O.I. | H.G. | S.X. | | 0.29 | 28.1 | 0.97 | Zm.6459.1.S1_at | CF647279 | hypothetical protein LOC100274304 | - | 2e-1 | At4g11430 | hydroxyproline-rich glycoprotein family protein | O.I. | H.G. | S.X. | | 0.28 | 28.1 | 0.94 | Zm.13795.2.S1_a_at | CF042915 | hypothetical protein LOC100191601 /// squalene synthase1 | - | 7e-20 | At4g34640 | SQS1 (SQUALENE SYNTHASE 1) | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.96 | Zm.4316.1.S1_a_at | AI881448 | hypothetical protein LOC100273812 /// cleavage and polyadenylation specificity factor 5 | - | 1e-39 | At4g25550 | protein binding | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.97 | Zm.2604.1.S1_at | AW066424 | - | - | 3e-1 | At1g75680 | AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7) | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.97 | Zm.5692.1.S1_at | AI629972 | hypothetical protein LOC100276119 | - | 1e-12 | At3g12150 | unknown protein | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.95 | Zm.3591.1.A1_at | AW000408 | hypothetical protein LOC100279870 | - | 1e-30 | At5g12040 | carbon-nitrogen hydrolase family protein | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.96 | Zm.5789.3.S1_at | X83696.1 | gamma-tubulin 1 | - | 4e-120 | At5g05620 | GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.96 | Zm.14124.1.A1_at | CK347727 | hypothetical protein LOC100192524 | - | 8e-1 | At1g37150 | HCS2 (holocarboxylase synthetase 2) | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.97 | Zm.2603.2.S1_at | AY111467.1 | - | - | 3e-2 | At5g02540 | short-chain dehydrogenase/reductase (SDR) family protein | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.97 | Zm.12235.1.S1_at | CF972364 | - | - | 7e+0 | At5g62980 | dihydroneopterin aldolase, putative | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.98 | Zm.6216.1.S1_at | CO531189 | hypothetical protein LOC100193337 | - | 2e-3 | At1g79590 | SYP52 (SYNTAXIN OF PLANTS 52) | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.98 | Zm.10072.1.A1_at | BM378946 | 50S ribosomal protein L1 | - | 9e-19 | At3g63490 | ribosomal protein L1 family protein | O.I. | H.G. | S.X. | | 0.27 | 24.6 | 0.98 | Zm.1377.1.A1_at | BG873710 | hypothetical protein LOC100275345 | - | 2e+0 | At2g46460 | nucleic acid binding | O.I. | H.G. | S.X. | | 0.26 | 22.7 | 0.96 | Zm.6137.2.A1_at | BG837946 | - | - | 3e-19 | At4g36480 | ATLCB1 (LONG-CHAIN BASE1) | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.96 | Zm.6557.2.A1_at | AW461001 | - | - | 1e+0 | Atmg00970 | - | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.4138.2.A1_at | AI881954 | - | - | 3e+0 | At1g09250 | transcription factor | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.14013.1.A1_a_at | BM075523 | hypothetical protein LOC100193147 /// hypothetical protein LOC100275870 /// hypothetical protein LOC100276632 /// hypothetical protein LOC100278726 | - | 2e+1 | At5g51860 | MADS-box protein (AGL72) | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.5778.1.A1_at | BG873747 | hypothetical protein LOC100275690 | - | 1e-1 | At5g11680 | unknown protein | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.4475.1.S1_a_at | CK144480 | hypothetical protein LOC100272240 /// thioredoxin H-type 5 /// 60S acidic ribosomal protein P1 /// umc1811 protein | - | 1e-1 | At1g54060 | ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1) | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.2912.1.A1_at | CF244896 | hypothetical protein LOC100272765 | - | 1e-82 | At1g10430 | PP2A-2 | O.I. | H.G. | S.X. | | 0.25 | 21.3 | 0.97 | Zm.3478.1.S1_a_at | AY124703.1 | sucrose synthase2 | - | 4e-47 | At5g49190 | SUS2 (SUCROSE SYNTHASE 2) | O.I. | H.G. | S.X. | |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 16.4 | 99.0 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes |  |
| 14.7 | 98.9 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 13.3 | 98.8 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.0 | 98.2 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.0 | 98.2 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.8 | 98.1 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.9 | 97.3 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.3 | 96.9 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.6 | 96.4 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 3.3 | 94.7 | GSM202304 | B73 immature ear tissue, biological replicate 3 | GSE8176 | Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data | |
