Co-expression analysis

Gene ID Zm.2031.1.A1_at
Gene name csu1120 protein
Homology with ArabidopsisSimilar to At3g50550: unknown protein (HF=5e-4)
Module size 6 genes
NF 0.43
%ile 50.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.2031.1.A1_atAY103664.1csu1120 protein-5e-4At3g50550unknown proteinO.I.H.G.S.X.
0.5065.70.98Zm.19094.1.S1_atCO522607hypothetical protein LOC100279575-2e-4At1g14540anionic peroxidase, putativeO.I.H.G.S.X.
0.4352.80.98Zm.1706.1.A1_atBF728433hypothetical protein LOC100276850-1e+0At5g47870unknown proteinO.I.H.G.S.X.
0.3844.20.98Zm.13794.1.S1_atAY104961.1--7e-1At5g53280PDV1 (PLASTID DIVISION1)O.I.H.G.S.X.
0.3641.30.97Zm.5715.1.A2_atBI542710O-methyltransferase ZRP4-3e+0At5g25752RBL11 (RHOMBOID-LIKE PROTEIN 11)O.I.H.G.S.X.
0.1811.60.98Zm.2966.1.S1_atAI001347hypothetical protein LOC100273775-8e-1At1g01810unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.499.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.798.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM202304B73 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.17856.2.S1_at, orthologous to the query gene, Zm.2031.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2Ta.17856.2.S1_atAt3g50550--3e-4At3g50550unknown proteinO.I.H.G.S.X.
0.1213.3Ta.17576.1.S1_s_atAt3g50550--4e+0At5g05380PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)O.I.H.G.S.X.
0.067.6TaAffx.117665.1.S1_atAt3g50550--4e+0At1g77200AP2 domain-containing transcription factor TINY, putativeO.I.H.G.S.X.
0.023.6Ta.24219.3.S1_x_atAt3g50550--1e+0At1g80990XH domain-containing proteinO.I.H.G.S.X.
0.023.6TaAffx.133256.1.S1_atAt3g50550--1e-1At5g45760transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.012.4TaAffx.130141.1.S1_atAt3g50550--7e+0At4g14746-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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