Co-expression analysis

Gene ID	Zm.2031.1.A1_at
Gene name	csu1120 protein
Homology with Arabidopsis	Similar to At3g50550: unknown protein (HF=5e-4)
Module size	6 genes
NF	0.43
%ile	50.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.2031.1.A1_at	AY103664.1	csu1120 protein	-	5e-4	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.19094.1.S1_at	CO522607	hypothetical protein LOC100279575	-	2e-4	At1g14540	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.1706.1.A1_at	BF728433	hypothetical protein LOC100276850	-	1e+0	At5g47870	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.13794.1.S1_at	AY104961.1	-	-	7e-1	At5g53280	PDV1 (PLASTID DIVISION1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.5715.1.A2_at	BI542710	O-methyltransferase ZRP4	-	3e+0	At5g25752	RBL11 (RHOMBOID-LIKE PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.98	Zm.2966.1.S1_at	AI001347	hypothetical protein LOC100273775	-	8e-1	At1g01810	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.4	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.85644.1.A1_at, orthologous to the query gene, Zm.2031.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.2	GmaAffx.85644.1.A1_at	At3g50550	-	-	6e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.75	89.5	GmaAffx.92457.1.S1_at	At3g50550	-	-	8e-17	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.90664.1.A1_at	At3g50550	-	-	4e-35	At1g35550	elongation factor Tu C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	GmaAffx.91593.1.S1_at	At3g50550	-	-	3e-10	At2g31390	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.91946.1.S1_at	At3g50550	-	-	2e-46	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.6289.3.A1_at	At3g50550	-	-	3e+0	At2g29350	SAG13	O.I.	H.G.	S.X.	Please select
0.53	74.2	GmaAffx.93371.1.S1_at	At3g50550	-	-	6e-5	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.88908.1.S1_at	At3g50550	-	-	2e-28	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.91862.1.S1_at	At3g50550	-	-	2e-29	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.92207.1.S1_at	At3g50550	-	-	6e-24	At1g54320	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.91827.1.S1_at	At3g50550	-	-	1e-44	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.90695.1.S1_at	At3g50550	Profilin, PRO2	-	6e-18	At2g19760	PRF1 (PROFILIN 1)	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.91522.1.S1_at	At3g50550	Ribosomal protein S6 (RPS6)	-	9e-23	At5g10360	EMB3010 (embryo defective 3010)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.14049.1.A1_at	At3g50550	-	-	3e-1	At5g64480	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.90297.1.S1_at	At3g50550	-	-	5e+0	At5g43450	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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