Co-expression analysis

Gene ID Zm.2020.1.A1_at
Gene name hypothetical protein LOC100274480
Homology with ArabidopsisSimilar to At1g01470: LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) (HF=1e-4)
Module size 6 genes
NF 0.51
%ile 64.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.95Zm.2020.1.A1_atAY105938.1hypothetical protein LOC100274480-1e-4At1g01470LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)O.I.H.G.S.X.
0.5775.10.96Zm.1779.1.A1_atCF020941--1e+1At5g64020unknown proteinO.I.H.G.S.X.
0.5775.10.97Zm.14760.1.A1_atAY104289.1Ubiquitin-conjugating enzyme E2-2e+0At2g13980nucleic acid bindingO.I.H.G.S.X.
0.5674.40.96Zm.16805.6.S1_x_atBG320419ADP-ribosylation factor 1-2e-99At1g10630ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)O.I.H.G.S.X.
0.4352.80.96Zm.15490.1.A1_atCD448845subtilisin-chymotrypsin inhibitor CI-1B-4e+0At5g38930germin-like protein, putativeO.I.H.G.S.X.
0.2828.10.95Zm.15683.1.A1_atCD440363--2e-2At1g27435unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.96ZmAffx.592.1.S1_atAI715020--1e+1At3g12300unknown proteinO.I.H.G.S.X.
0.6077.80.95Zm.12381.1.S1_x_atBQ578121--1e+0At2g07363unknown proteinO.I.H.G.S.X.
0.5976.10.94Zm.6343.1.A1_atAI691472hypothetical protein LOC100193609-8e-3At4g34050caffeoyl-CoA 3-O-methyltransferase, putativeO.I.H.G.S.X.
0.5571.60.95Zm.13106.1.A1_atCA404482hypothetical protein LOC100217234-5e+0At5g57815cytochrome c oxidase subunit 6b, putativeO.I.H.G.S.X.
0.5065.70.91Zm.15421.1.A1_a_atAY107122.1--1e+0At3g42050vacuolar ATP synthase subunit H family proteinO.I.H.G.S.X.
0.5065.70.95Zm.11071.1.A1_atBM336687--4e+0At3g13403-O.I.H.G.S.X.
0.4861.30.94Zm.19054.1.A1_atCO534445bile acid sodium symporter/ transporter-3e+0At5g03660unknown proteinO.I.H.G.S.X.
0.4759.90.92Zm.10720.3.A1_a_atAI711831--3e+0At3g13430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4352.80.91Zm.2557.3.A1_a_atBU050874DNA binding protein-2e+0At3g58080unknown proteinO.I.H.G.S.X.
0.4048.50.93Zm.19017.1.A1_atCO524887CHY1-2e-3At5g65940CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)O.I.H.G.S.X.
0.4048.50.95Zm.12273.1.S1_atBQ577821hypothetical protein LOC100191433-8e-1At4g31310avirulence-responsive protein-related / avirulence induced gene (AIG) protein-relatedO.I.H.G.S.X.
0.4048.50.95Zm.19155.1.S1_atCA401905calcium-dependent protein kinase, isoform 2-9e-29At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.3844.20.93Zm.15602.1.S1_atCA399213--3e-5At3g1460060S ribosomal protein L18A (RPL18aC)O.I.H.G.S.X.
0.3336.00.92Zm.16747.2.A1_atCB605202Hypothetical protein LOC100192723-2e-59At2g18020EMB2296 (embryo defective 2296)O.I.H.G.S.X.
0.3336.00.94Zm.4637.1.A1_atAW054440hypothetical protein LOC100276483-7e-2At3g46930protein kinase family proteinO.I.H.G.S.X.
0.3233.40.95ZmAffx.406.9.S1_atAI670512--1e+1At5g16580BGLU2 (BETA GLUCOSIDASE 2)O.I.H.G.S.X.
0.3233.40.96Zm.6480.2.S1_atAI065715--1e-11At5g64200ATSC35O.I.H.G.S.X.
0.3131.60.93Zm.1241.1.A1_atAY111716.1fiber protein Fb34-6e+0At4g24240WRKY7O.I.H.G.S.X.
0.3029.80.89Zm.15000.1.A1_atBG840495hypothetical protein LOC100217162-1e+0At2g34100unknown proteinO.I.H.G.S.X.
0.2928.10.93Zm.18774.1.S1_atCO524725--6e+0At5g07560GRP20 (GLYCINE-RICH PROTEIN 20)O.I.H.G.S.X.
0.2928.10.94Zm.13133.1.S1_atCA404786hypothetical protein LOC100274058-2e-4At3g06300AT-P4H-2 (A. THALIANA P4H ISOFORM 2)O.I.H.G.S.X.
0.2928.10.97Zm.3084.1.A1_atCA404291hypothetical protein LOC100216830-9e-1At5g56600PRF3 (PROFILIN 3)O.I.H.G.S.X.
0.2828.10.94Zm.13857.1.S1_atAF439726.1methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase-3e-13At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.2724.60.94Zm.19216.1.S1_atAI711740hypothetical protein LOC100276723-8e-10At5g44860unknown proteinO.I.H.G.S.X.
0.2724.60.93Zm.1838.1.A1_atCO526531hypothetical protein LOC100276173-8e+0At5g160103-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family proteinO.I.H.G.S.X.
0.2724.60.95Zm.11629.1.A1_atBM379422hypothetical protein LOC100272434-3e-1At4g18620-O.I.H.G.S.X.
0.2622.70.94Zm.6159.2.A1_x_atBE510560--1e-20At2g34160nucleic acid bindingO.I.H.G.S.X.
0.2521.30.91Zm.13914.1.S1_atAF145706.1plasma membrane intrinsic protein homolog-3e-16At1g01620PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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