Co-expression analysis

Gene ID Zm.2020.1.A1_at
Gene name hypothetical protein LOC100274480
Homology with ArabidopsisSimilar to At1g01470: LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) (HF=1e-4)
Module size 6 genes
NF 0.51
%ile 64.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.95Zm.2020.1.A1_atAY105938.1hypothetical protein LOC100274480-1e-4At1g01470LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)O.I.H.G.S.X.
0.5775.10.96Zm.1779.1.A1_atCF020941--1e+1At5g64020unknown proteinO.I.H.G.S.X.
0.5775.10.97Zm.14760.1.A1_atAY104289.1Ubiquitin-conjugating enzyme E2-2e+0At2g13980nucleic acid bindingO.I.H.G.S.X.
0.5674.40.96Zm.16805.6.S1_x_atBG320419ADP-ribosylation factor 1-2e-99At1g10630ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)O.I.H.G.S.X.
0.4352.80.96Zm.15490.1.A1_atCD448845subtilisin-chymotrypsin inhibitor CI-1B-4e+0At5g38930germin-like protein, putativeO.I.H.G.S.X.
0.2828.10.95Zm.15683.1.A1_atCD440363--2e-2At1g27435unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig3842_s_at, orthologous to the query gene, Zm.2020.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5674.3Contig3842_s_atAt1g01470--1e-3At1g01470LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)O.I.H.G.S.X.
0.2935.5Contig2282_atAt1g01470--3e+0At1g24050unknown proteinO.I.H.G.S.X.
0.2021.1HT01D22w_atAt1g01470--1e+0At3g17500F-box family proteinO.I.H.G.S.X.
0.097.4Contig4995_atAt1g01470--2e-1At2g26290ARSK1 (root-specific kinase 1)O.I.H.G.S.X.
0.097.4Contig13832_atAt1g01470--8e+0At5g40981unknown proteinO.I.H.G.S.X.
0.097.4Contig7804_atAt1g01470--3e-25At2g44900armadillo/beta-catenin repeat family protein / F-box family proteinO.I.H.G.S.X.
0.086.5Contig16608_atAt1g01470--3e-1At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)O.I.H.G.S.X.
0.086.5Contig3844_atAt1g01470--5e-47At4g02080ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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