CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.2016.1.S1_at

Gene name zinc finger, C3HC4 type family protein
Homology with Arabidopsis Similar to At5g51195: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.60

%ile 79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.1 0.98 Zm.2016.1.S1_at AW566149 zinc finger, C3HC4 type family protein - 2e+0 At5g51195 unknown protein O.I. H.G. S.X.
0.73 89.9 0.98 Zm.2810.1.S1_at CK371548 calcitonin peptide-receptor component protein - 7e-1 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.55 71.6 0.98 Zm.10479.1.S1_at BQ486450 - - 5e+0 At5g13990 ATEXO70C2 (exocyst subunit EXO70 family protein C2) O.I. H.G. S.X.
0.55 71.6 0.98 Zm.7620.1.A1_at CF629426 hypothetical protein LOC100279978 - 2e-3 At2g24010 scpl23 (serine carboxypeptidase-like 23) O.I. H.G. S.X.
0.55 71.6 0.98 Zm.10534.1.A1_x_at CO049306 receptor protein kinase CLAVATA1 - 2e+0 At2g36890 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) O.I. H.G. S.X.
0.40 48.5 0.98 Zm.19350.1.A1_at CO531475 yip1 domain family member 6 - 2e-18 At4g30260 integral membrane Yip1 family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.53	69.1	0.98	Zm.2016.1.S1_at	AW566149	zinc finger, C3HC4 type family protein	-	2e+0	At5g51195	unknown protein	O.I.	H.G.	S.X.
0.73	89.9	0.98	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.55	71.6	0.98	Zm.10479.1.S1_at	BQ486450	-	-	5e+0	At5g13990	ATEXO70C2 (exocyst subunit EXO70 family protein C2)	O.I.	H.G.	S.X.
0.55	71.6	0.98	Zm.7620.1.A1_at	CF629426	hypothetical protein LOC100279978	-	2e-3	At2g24010	scpl23 (serine carboxypeptidase-like 23)	O.I.	H.G.	S.X.
0.55	71.6	0.98	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	O.I.	H.G.	S.X.
0.40	48.5	0.98	Zm.19350.1.A1_at	CO531475	yip1 domain family member 6	-	2e-18	At4g30260	integral membrane Yip1 family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	85.8	0.97	Zm.18258.1.A1_at	CN845261	hypothetical protein LOC100193725	-	3e-6	At2g38610	KH domain-containing protein	O.I.	H.G.	S.X.
0.57	75.1	0.96	Zm.12940.2.A1_at	AI770813	-	-	8e-1	At4g15050	unknown protein	O.I.	H.G.	S.X.
0.55	71.6	0.97	Zm.8244.1.S1_at	BM073405	-	-	2e+0	At1g30972	-	O.I.	H.G.	S.X.
0.55	71.6	0.97	Zm.9102.1.A1_at	BM333481	-	-	2e-2	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	O.I.	H.G.	S.X.
0.55	71.6	0.97	Zm.3925.1.A1_at	CF045284	hypothetical protein LOC100273553	-	4e-8	At1g31930	XLG3 (extra-large GTP-binding protein 3)	O.I.	H.G.	S.X.
0.50	65.7	0.95	Zm.3825.1.A1_at	BM073848	hypothetical protein LOC100276269 /// lipid binding protein	-	4e-1	At5g02650	unknown protein	O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.218.1.A1_at	AB016802.1	MAP kinase 5	-	2e-50	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.13556.1.A1_at	AY108151.1	-	-	9e-1	At5g66490	unknown protein	O.I.	H.G.	S.X.
0.50	65.7	0.97	Zm.7781.1.S1_at	AY104909.1	-	-	5e-8	At2g22125	binding	O.I.	H.G.	S.X.
0.47	59.9	0.95	Zm.231.1.S1_at	CK827218	invertase2	-	3e-4	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	O.I.	H.G.	S.X.
0.46	58.4	0.97	Zm.7282.1.A1_at	AB016810.1	ferredoxin2	-	3e-2	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.
0.46	58.4	0.97	Zm.8767.2.A1_a_at	BM351177	-	-	6e+0	At3g12510	unknown protein	O.I.	H.G.	S.X.
0.42	51.3	0.96	ZmAffx.356.1.A1_at	AI670543	-	-	3e-3	At5g09750	HEC3 (HECATE 3)	O.I.	H.G.	S.X.
0.42	51.3	0.97	Zm.7463.1.A1_at	BM078503	hypothetical protein LOC100276250	-	2e+0	At1g21090	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.40	48.5	0.95	Zm.13311.1.A1_at	AI461509	-	-	5e+0	At4g04190	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.8654.1.A1_at	BM334074	hypothetical protein LOC100280034	-	3e-2	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.
0.40	48.5	0.97	Zm.5095.1.S1_s_at	BM269118	hypothetical protein LOC100192930	-	2e+0	At4g16447	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.97	Zm.463.1.A1_at	U95953.1	viviparous14	-	5e-6	At3g14440	NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)	O.I.	H.G.	S.X.
0.38	44.2	0.97	Zm.17366.1.S1_s_at	CK371241	-	-	1e+1	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.
0.38	44.2	0.97	Zm.12059.1.A1_at	CF244848	hypothetical protein LOC100273055	-	4e+0	At5g45680	FK506-binding protein 1 (FKBP13)	O.I.	H.G.	S.X.
0.38	44.2	0.97	Zm.1158.1.A1_at	AY107067.1	-	-	4e-31	At5g10270	CDKC	O.I.	H.G.	S.X.
0.38	44.2	0.98	Zm.12997.1.S1_at	CA402647	-	-	2e-21	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	O.I.	H.G.	S.X.
0.35	38.9	0.95	ZmAffx.473.1.S1_at	AI677499	Starch synthase IIIb-2 precursor	-	3e+0	At3g12145	FLR1	O.I.	H.G.	S.X.
0.33	36.0	0.94	Zm.3748.1.S1_at	CF624336	-	-	4e-23	At5g11110	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	O.I.	H.G.	S.X.
0.33	36.0	0.95	Zm.3427.1.A1_at	AY108411.1	cortical cell-delineating protein	-	9e-2	At4g12545	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.33	36.0	0.96	Zm.7960.1.A1_at	CF637637	transparent testa 12 protein	-	5e-1	At4g21910	MATE efflux family protein	O.I.	H.G.	S.X.
0.33	36.0	0.96	Zm.2144.1.A1_at	CF626427	-	-	6e+0	At4g10112	unknown protein	O.I.	H.G.	S.X.
0.33	36.0	0.96	Zm.15732.1.A1_a_at	AY104940.1	hypothetical protein LOC100280046	-	6e-9	At3g06980	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.5161.1.S1_at	CD437341	leafbladeless1	-	1e+0	At1g54170	CID3 (CTC-Interacting Domain 3)	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.15705.1.A1_at	CD440189	-	-	1e-4	At4g38270	GAUT3 (Galacturonosyltransferase 3)	O.I.	H.G.	S.X.
0.32	33.4	0.97	Zm.3263.1.A1_at	BG842806	nudix hydrolase 13	-	2e+0	At3g52525	OFP6 (OVATE FAMILY PROTEIN 6)	O.I.	H.G.	S.X.
0.32	33.4	0.97	Zm.6293.1.A1_at	CF038760	hypothetical protein LOC100216905	-	4e+0	At5g08400	unknown protein	O.I.	H.G.	S.X.
0.31	31.6	0.93	Zm.3422.1.A1_at	CO522674	maize 20S proteasome alpha subunit	-	5e-26	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	O.I.	H.G.	S.X.
0.31	31.6	0.95	Zm.12634.6.S1_x_at	CD446319	hypothetical protein LOC100193874	-	8e-55	At3g04400	emb2171 (embryo defective 2171)	O.I.	H.G.	S.X.
0.31	31.6	0.96	Zm.19112.1.A1_at	CO517957	-	-	3e-4	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	O.I.	H.G.	S.X.
0.30	29.8	0.97	Zm.18496.1.S1_at	CO519895	hypothetical protein LOC100217235	-	2e-1	At5g05100	nucleic acid binding	O.I.	H.G.	S.X.
0.30	29.8	0.97	Zm.9814.1.A1_at	BM351590	-	-	4e+0	At5g26840	unknown protein	O.I.	H.G.	S.X.
0.30	29.8	0.96	Zm.5251.1.A1_at	CD982303	hypothetical protein LOC100273610	-	3e-15	At4g20980	eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative	O.I.	H.G.	S.X.
0.30	29.8	0.97	Zm.7941.1.A1_at	BM080529	-	-	1e+0	At3g50040	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	0.93	Zm.18048.1.A1_at	CF624002	-	-	5e+0	At2g32580	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	0.97	ZmAffx.791.1.S1_at	AI759133	Hypothetical protein LOC100192666	-	9e-1	At1g03660	-	O.I.	H.G.	S.X.
0.29	28.1	0.97	Zm.13527.1.S1_at	AY108376.1	-	-	4e-1	At2g20820	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	0.97	Zm.18436.1.A1_at	CO521866	-	-	6e-1	At4g19003	VPS25	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.17186.1.A1_at	BM416697	hypothetical protein LOC100280351	-	5e-5	At5g57800	CER3 (ECERIFERUM 3)	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.8314.1.A1_at	BM953578	hypothetical protein LOC100277461	-	6e+0	At2g38640	unknown protein	O.I.	H.G.	S.X.
0.27	24.6	0.97	Zm.18795.1.S1_at	CO526138	hypothetical protein LOC100273526	-	2e-8	At5g11350	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.3461.1.A1_at	BU197756	-	-	1e-19	At3g13470	chaperonin, putative	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.7541.1.A1_at	BM341407	hypothetical protein LOC100192095	-	6e+0	At3g43110	unknown protein	O.I.	H.G.	S.X.
0.27	24.6	0.97	ZmAffx.953.1.A1_at	AI833455	hypothetical protein LOC100275413	-	1e+1	At5g32440	-	O.I.	H.G.	S.X.
0.27	24.6	0.97	ZmAffx.966.1.S1_at	AI677247	-	-	8e-1	At5g47830	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.8 99.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0 99.2 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8 99.0 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0 98.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0 98.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2 98.2 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM375796 Deep-sowing 10d treatment GA3, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
18.8	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Zm.2016.1.S1_at
Gene name	zinc finger, C3HC4 type family protein
Homology with Arabidopsis	Similar to At5g51195: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.60
%ile	79.9

Co-expression analysis

Gene ID Zm.2016.1.S1_at Gene name zinc finger, C3HC4 type family protein Homology with ArabidopsisSimilar to At5g51195: unknown protein (HF=2e+0) Module size 6 genes NF 0.60 %ile 79.9

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.2016.1.S1_at

Gene name zinc finger, C3HC4 type family protein
Homology with Arabidopsis Similar to At5g51195: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.60

%ile 79.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera