Co-expression analysis

Gene ID	Zm.2016.1.S1_at
Gene name	zinc finger, C3HC4 type family protein
Homology with Arabidopsis	Similar to At5g51195: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.60
%ile	79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.98	Zm.2016.1.S1_at	AW566149	zinc finger, C3HC4 type family protein	-	2e+0	At5g51195	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.10479.1.S1_at	BQ486450	-	-	5e+0	At5g13990	ATEXO70C2 (exocyst subunit EXO70 family protein C2)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.7620.1.A1_at	CF629426	hypothetical protein LOC100279978	-	2e-3	At2g24010	scpl23 (serine carboxypeptidase-like 23)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.19350.1.A1_at	CO531475	yip1 domain family member 6	-	2e-18	At4g30260	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.8	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

A co-expression module including the grape gene, 1622530_at, orthologous to the query gene, Zm.2016.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	1622530_at	At5g51195	hypothetical protein LOC100249036	-	9e-1	At4g19250	kelch repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1619659_s_at	At5g51195	pectate lyase PL1-like	-	2e-1	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1609591_at	At5g51195	hypothetical protein LOC100241753	-	1e-3	At3g61900	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	1619968_at	At5g51195	similar to cysteine protease Cp5	-	3e-2	At3g19400	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.41	58.7	1616147_at	At5g51195	hypothetical protein LOC100243192	-	2e-6	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	O.I.	H.G.	S.X.	Please select
0.35	48.5	1620050_at	At5g51195	hypothetical protein LOC100244027	-	1e-5	At5g17500	glycosyl hydrolase family 5 protein / cellulase family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1620218_at	At5g51195	hypothetical protein LOC100262456	-	1e+0	At1g64490	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1612226_at	At5g51195	hypothetical protein LOC100259151	-	1e-29	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	1606482_at	At5g51195	hypothetical protein LOC100243077	-	3e-10	At3g44830	lecithin:cholesterol acyltransferase family protein / LACT family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1608623_s_at	At5g51195	hypothetical protein LOC100257555	-	9e-2	At5g49630	AAP6 (AMINO ACID PERMEASE 6)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1619056_at	At5g51195	hypothetical protein LOC100248590	-	2e-5	At1g11570	nuclear transport factor 2 (NTF2), putative	O.I.	H.G.	S.X.	Please select
0.25	30.5	1618576_at	At5g51195	pectate lyase PL1-like	-	4e-124	At4g13710	pectate lyase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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