Co-expression analysis

Gene ID	Zm.2016.1.S1_at
Gene name	zinc finger, C3HC4 type family protein
Homology with Arabidopsis	Similar to At5g51195: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.60
%ile	79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.98	Zm.2016.1.S1_at	AW566149	zinc finger, C3HC4 type family protein	-	2e+0	At5g51195	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.10479.1.S1_at	BQ486450	-	-	5e+0	At5g13990	ATEXO70C2 (exocyst subunit EXO70 family protein C2)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.7620.1.A1_at	CF629426	hypothetical protein LOC100279978	-	2e-3	At2g24010	scpl23 (serine carboxypeptidase-like 23)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.19350.1.A1_at	CO531475	yip1 domain family member 6	-	2e-18	At4g30260	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.8	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

A co-expression module including the barley gene, U43494_at, orthologous to the query gene, Zm.2016.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	U43494_at	At5g51195	-	-	3e+0	At3g53490	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	Contig12526_at	At5g51195	-	-	9e-1	At5g23280	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.58	74.9	Contig11041_at	At5g51195	-	-	1e+0	At3g08940	LHCB4.2 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select
0.49	63.7	Contig1204_s_at	At5g51195	cytosolic heat shock protein 90	-	0	At5g56010	HSP81-3	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig19645_at	At5g51195	-	-	5e-1	At4g19610	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig16898_at	At5g51195	-	-	1e-1	At1g44608	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig699_s_at	At5g51195	-	-	1e+0	At3g07425	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig11519_at	At5g51195	-	-	2e-4	At1g66680	AR401	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig11168_at	At5g51195	-	-	1e-15	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig6535_s_at	At5g51195	-	-	5e-34	At2g42500	PP2A-4	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig8858_at	At5g51195	-	-	7e-20	At5g01010	-	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig1786_s_at	At5g51195	-	-	1e+0	At3g52800	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig8990_at	At5g51195	-	-	3e-10	At2g02800	APK2B (PROTEIN KINASE 2B)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig4511_at	At5g51195	SGT1 protein	-	1e-11	At4g11260	SGT1B	O.I.	H.G.	S.X.	Please select
0.39	50.5	EBro08_SQ007_K09_at	At5g51195	-	-	2e-2	At1g55080	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig6764_at	At5g51195	-	-	1e-6	At5g26710	glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig6254_at	At5g51195	-	-	3e+0	At2g37950	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig26496_at	At5g51195	blufensin 2	-	7e-1	At5g04840	bZIP protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig17611_at	At5g51195	-	-	2e+0	At3g03950	protein binding	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig20217_s_at	At5g51195	-	-	1e+0	At5g04045	Expressed protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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