Co-expression analysis

Gene ID Zm.2016.1.S1_at
Gene name zinc finger, C3HC4 type family protein
Homology with ArabidopsisSimilar to At5g51195: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.60
%ile 79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.10.98Zm.2016.1.S1_atAW566149zinc finger, C3HC4 type family protein-2e+0At5g51195unknown proteinO.I.H.G.S.X.
0.7389.90.98Zm.2810.1.S1_atCK371548calcitonin peptide-receptor component protein-7e-1At1g18170immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.5571.60.98Zm.10479.1.S1_atBQ486450--5e+0At5g13990ATEXO70C2 (exocyst subunit EXO70 family protein C2)O.I.H.G.S.X.
0.5571.60.98Zm.7620.1.A1_atCF629426hypothetical protein LOC100279978-2e-3At2g24010scpl23 (serine carboxypeptidase-like 23)O.I.H.G.S.X.
0.5571.60.98Zm.10534.1.A1_x_atCO049306receptor protein kinase CLAVATA1-2e+0At2g36890RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)O.I.H.G.S.X.
0.4048.50.98Zm.19350.1.A1_atCO531475yip1 domain family member 6-2e-18At4g30260integral membrane Yip1 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.899.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.099.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.899.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM375796Deep-sowing 10d treatment GA3, biological rep2GSE15048Gibberellin-induced gene expression in maize mesocotyl under deep-sowing conditionLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.91387.1.S1_s_at, orthologous to the query gene, Zm.2016.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6GmaAffx.91387.1.S1_s_atAt5g51195--2e-26At1g62750SCO1 (SNOWY COTYLEDON 1)O.I.H.G.S.X.
0.8392.5Gma.4553.1.A1_atAt5g51195--1e-48At1g52510hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.6181.8Gma.10987.2.S1_a_atAt5g51195--3e-133At2g39730RCA (RUBISCO ACTIVASE)O.I.H.G.S.X.
0.6080.7GmaAffx.91387.1.S1_atAt5g51195--2e-26At1g62750SCO1 (SNOWY COTYLEDON 1)O.I.H.G.S.X.
0.5979.5Gma.16539.1.S1_atAt5g51195--1e-32At3g24430HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)O.I.H.G.S.X.
0.4259.3Gma.13129.1.S1_atAt5g51195--2e-62At5g17170ENH1 (enhancer of sos3-1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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