Co-expression analysis

Gene ID	Zm.2008.1.A1_at
Gene name	hypothetical protein LOC100279662
Homology with Arabidopsis	Similar to At3g02990: ATHSFA1E (HF=8e-8)
Module size	6 genes
NF	0.39
%ile	43.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.99	Zm.2008.1.A1_at	CF623731	hypothetical protein LOC100279662	-	8e-8	At3g02990	ATHSFA1E	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	ZmAffx.1075.1.A1_at	AI947879	-	-	1e+1	At5g10130	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.12454.1.A1_at	CF629114	hypothetical protein LOC100273736	-	6e-3	At1g10640	polygalacturonase	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.15979.1.A1_at	AW091403	hypothetical protein LOC100277589	-	8e-2	At3g10750	-	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.99	ZmAffx.954.1.S1_at	AI833471	-	-	3e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.99	Zm.10517.1.S1_at	CO533971	hypothetical protein LOC100272293	-	3e-16	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	98.4	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.8	98.1	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.5	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage