Co-expression analysis

Gene ID	Zm.1996.1.S1_at
Gene name	hypothetical protein LOC100276029
Homology with Arabidopsis	Similar to At1g47420: - (HF=6e-4)
Module size	6 genes
NF	0.49
%ile	61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.1996.1.S1_at	CK347826	hypothetical protein LOC100276029	-	6e-4	At1g47420	-	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.4380.1.A1_at	AY105814.1	Hypothetical protein LOC100193145	-	5e-10	At2g29200	APUM1 (Arabidopsis Pumilio 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.13114.1.A1_at	CA404567	chloroplast outer envelope protein 86	-	4e-3	At5g57720	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.6161.1.A1_at	AW091191	hypothetical protein LOC100193997	-	2e-1	At1g78150	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.1119.1.A1_at	BE510368	-	-	1e-2	At1g78922	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.98	Zm.5171.1.S1_at	AY107361.1	transposon protein	-	2e-8	At5g25510	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.9	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.5	96.3	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.5	96.3	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.3	94.7	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.3	94.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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