Co-expression analysis

Gene ID Zm.1969.1.A1_at
Gene name hypothetical protein LOC100275298
Homology with ArabidopsisSimilar to At3g15680: zinc finger (Ran-binding) family protein (HF=6e+0)
Module size 6 genes
NF 0.16
%ile 10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.10.90Zm.1969.1.A1_atBM378406hypothetical protein LOC100275298-6e+0At3g15680zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.3538.90.90Zm.7036.1.S1_atCF041561hypothetical protein LOC100278098-2e-8At2g45860unknown proteinO.I.H.G.S.X.
0.147.70.90Zm.15978.1.A1_atAI734470Hypothetical protein LOC100191203-1e+0At4g27310zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.125.90.90Zm.758.1.S1_atCK827705dehydrogenase/reductase SDR family member 2-4e-5At4g05530IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)O.I.H.G.S.X.
0.094.00.91Zm.7056.5.S1_atAY108536.1hypothetical protein LOC100272517-3e-15At5g45390CLPP4 (CLP PROTEASE P4)O.I.H.G.S.X.
0.083.40.90Zm.12166.1.A1_atAY108056.1phenylalanyl-tRNA synthetase beta chain-1e-3At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.698.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
7.497.8GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
6.997.7GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
6.297.4GSM253274ZM_8d_Mock_3inf_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
6.197.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.797.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.797.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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