Co-expression analysis

Gene ID Zm.1960.1.A1_at
Gene name palmitoyltransferase swf1
Homology with ArabidopsisSimilar to At3g04970: zinc finger (DHHC type) family protein (HF=4e-1)
Module size 6 genes
NF 0.65
%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4455.70.98Zm.1960.1.A1_atAW566154palmitoyltransferase swf1-4e-1At3g04970zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.7389.90.97Zm.15437.1.S1_atCD219447hypothetical protein LOC100191830-6e+0At5g3767015.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)O.I.H.G.S.X.
0.7389.90.98ZmAffx.834.1.A1_atAI770566--8e-1At1g54420unknown proteinO.I.H.G.S.X.
0.7188.20.98ZmAffx.757.1.A1_atAI745972--3e+0At4g32960unknown proteinO.I.H.G.S.X.
0.4658.40.98Zm.1342.1.S1_atBG842254--4e-5At1g23230unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.13366.1.A1_a_atCF634270--3e-1At3g45960ATEXLA3 (arabidopsis thaliana expansin-like a3)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.10.96Zm.7416.1.A1_s_atBM078324hypothetical protein LOC100216937-1e+0At4g15765electron carrier/ monooxygenase/ oxidoreductaseO.I.H.G.S.X.
0.7389.90.94ZmAffx.712.1.A1_atAI738386--3e+0At4g38092unknown proteinO.I.H.G.S.X.
0.5775.10.95Zm.6814.1.A1_atCA402390--2e+0At1g24580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5674.40.94Zm.17989.1.A1_atCF630109--2e+0At5g64130-O.I.H.G.S.X.
0.5065.70.97Zm.1104.1.A1_atBE056041Zea mays MADS8-4e-2At2g03710SEP4 (SEPALLATA 4)O.I.H.G.S.X.
0.5065.70.97Zm.15414.1.A1_atCD435566--5e+0At4g01170unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.16824.1.S1_a_atCF602732SAM domain family protein-5e-1At3g07170sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.4352.80.96Zm.19362.1.S1_atAY111241.1--1e+0At5g13440ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.4048.50.95Zm.4600.1.A1_atBM078673auxin-inducible protein-2e-1At4g14870P-P-bond-hydrolysis-driven protein transmembrane transporterO.I.H.G.S.X.
0.4048.50.97Zm.9645.1.S1_atAY207047.1ZmMybst1-1e-8At3g16350myb family transcription factorO.I.H.G.S.X.
0.3844.20.97Zm.4545.1.A1_atAI734703VAMP-like protein YKT62-9e-18At5g58060YKT61O.I.H.G.S.X.
0.3233.40.96Zm.4602.1.A1_atAI737296--1e-1At3g01280VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)O.I.H.G.S.X.
0.3029.80.93Zm.13134.1.S1_atCA404787--2e+0At3g5374060S ribosomal protein L36 (RPL36B)O.I.H.G.S.X.
0.3029.80.96Zm.18083.1.A1_atBU079763--1e-17At2g38670PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)O.I.H.G.S.X.
0.2928.10.96Zm.515.1.S1_atAF273767.1protoporphyrinogen IX oxidase-4e-3At5g14220HEMG2O.I.H.G.S.X.
0.2928.10.96Zm.17671.1.S1_atCK369711--3e+0At2g39510nodulin MtN21 family proteinO.I.H.G.S.X.
0.2928.10.98Zm.18465.1.A1_atCO530071--1e+1At4g09100zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2724.60.96ZmAffx.926.1.S1_atAI795350hypothetical protein LOC100193132-3e+0At4g32960unknown proteinO.I.H.G.S.X.
0.2622.70.96Zm.17335.1.S1_atCK370084alkaline alpha galactosidase 1-1e-5At1g55740AtSIP1 (Arabidopsis thaliana seed imbibition 1)O.I.H.G.S.X.
0.2521.30.96Zm.18085.1.S1_atCK986038hypothetical protein LOC100274126-5e-11At5g13800hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.2521.30.97Zm.18431.1.S1_atCO517527--4e-28At3g21690MATE efflux family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.598.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
6.197.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.597.1GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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