Co-expression analysis

Gene ID	Zm.1960.1.A1_at
Gene name	palmitoyltransferase swf1
Homology with Arabidopsis	Similar to At3g04970: zinc finger (DHHC type) family protein (HF=4e-1)
Module size	6 genes
NF	0.65
%ile	86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.98	Zm.1960.1.A1_at	AW566154	palmitoyltransferase swf1	-	4e-1	At3g04970	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.97	Zm.15437.1.S1_at	CD219447	hypothetical protein LOC100191830	-	6e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	ZmAffx.834.1.A1_at	AI770566	-	-	8e-1	At1g54420	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.98	ZmAffx.757.1.A1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.1342.1.S1_at	BG842254	-	-	4e-5	At1g23230	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.13366.1.A1_a_at	CF634270	-	-	3e-1	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.1	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.5	97.1	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the grape gene, 1615847_at, orthologous to the query gene, Zm.1960.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1615847_at	At3g04970	similar to SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor	-	5e-15	At1g08540	SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.57	79.8	1620553_at	At3g04970	hypothetical protein LOC100265994	-	4e-28	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1611346_at	At3g04970	hypothetical protein LOC100246730	-	3e-39	At1g64355	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1608591_at	At3g04970	hypothetical protein LOC100245866	-	2e-8	At3g06980	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	1622495_at	At3g04970	hypothetical protein LOC100248841	-	4e-26	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1617061_s_at	At3g04970	hypothetical protein LOC100243475	-	2e-15	At5g55220	trigger factor type chaperone family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1616222_at	At3g04970	-	-	1e-18	At3g47650	bundle-sheath defective protein 2 family / bsd2 family	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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