Co-expression analysis

Gene ID Zm.1960.1.A1_at
Gene name palmitoyltransferase swf1
Homology with ArabidopsisSimilar to At3g04970: zinc finger (DHHC type) family protein (HF=4e-1)
Module size 6 genes
NF 0.65
%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4455.70.98Zm.1960.1.A1_atAW566154palmitoyltransferase swf1-4e-1At3g04970zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.7389.90.97Zm.15437.1.S1_atCD219447hypothetical protein LOC100191830-6e+0At5g3767015.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)O.I.H.G.S.X.
0.7389.90.98ZmAffx.834.1.A1_atAI770566--8e-1At1g54420unknown proteinO.I.H.G.S.X.
0.7188.20.98ZmAffx.757.1.A1_atAI745972--3e+0At4g32960unknown proteinO.I.H.G.S.X.
0.4658.40.98Zm.1342.1.S1_atBG842254--4e-5At1g23230unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.13366.1.A1_a_atCF634270--3e-1At3g45960ATEXLA3 (arabidopsis thaliana expansin-like a3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.598.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
6.197.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.597.1GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.86300.1.S1_at, orthologous to the query gene, Zm.1960.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.6TaAffx.86300.1.S1_atAt3g04970--5e+0At3g11860unknown proteinO.I.H.G.S.X.
0.5475.5Ta.22932.1.S1_x_atAt3g04970--1e+0At4g15710unknown proteinO.I.H.G.S.X.
0.4969.7Ta.13635.2.S1_atAt3g04970--1e-11At1g55270kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.4869.0Ta.24224.1.A1_atAt3g04970--3e-1At1g59640ZCW32O.I.H.G.S.X.
0.4666.8Ta.9486.1.S1_a_atAt3g04970--4e-13At2g18750calmodulin-binding proteinO.I.H.G.S.X.
0.4666.8Ta.12232.1.A1_atAt3g04970--4e+0At5g54840SGP1O.I.H.G.S.X.
0.4058.4TaAffx.128803.1.S1_atAt3g04970--2e+0At5g09750HEC3 (HECATE 3)O.I.H.G.S.X.
0.3956.1TaAffx.71229.1.A1_atAt3g04970--7e+0At4g10595LCR2 (Low-molecular-weight cysteine-rich 2)O.I.H.G.S.X.
0.3956.1Ta.9121.1.S1_atAt3g04970--1e-5At2g29300tropinone reductase, putative / tropine dehydrogenase, putativeO.I.H.G.S.X.
0.3854.7Ta.8749.1.S1_a_atAt3g04970--5e-14At3g03330short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.3854.7Ta.6295.3.S1_atAt3g04970--3e-1At3g61890ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)O.I.H.G.S.X.
0.3854.7Ta.7444.1.A1_atAt3g04970--4e+0At3g61900auxin-responsive family proteinO.I.H.G.S.X.
0.3854.7Ta.13635.1.A1_atAt3g04970--3e-1At1g55270kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.3753.0Ta.3433.1.S1_atAt3g04970--1e-14At4g27650PEL1 (PELOTA)O.I.H.G.S.X.
0.3651.9Ta.7856.1.S1_atAt3g04970--5e-1At1g54820protein kinase family proteinO.I.H.G.S.X.
0.3346.9Ta.3071.1.S1_atAt3g04970--2e-1At4g08760-O.I.H.G.S.X.
0.3346.9Ta.7292.1.S1_atAt3g04970--1e-1At3g15490unknown proteinO.I.H.G.S.X.
0.3346.9Ta.13635.2.S1_a_atAt3g04970--1e-11At1g55270kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.3346.9TaAffx.113301.1.S1_atAt3g04970--2e-2At4g20290unknown proteinO.I.H.G.S.X.
0.3244.4Ta.6049.1.S1_atAt3g04970--4e-38At5g49910CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)O.I.H.G.S.X.
0.2939.2Ta.4585.1.S1_atAt3g04970--2e-4At5g47760ATPGLP2 (ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2)O.I.H.G.S.X.
0.2939.2Ta.9380.1.S1_x_atAt3g04970--3e-4At4g38220aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putativeO.I.H.G.S.X.
0.2839.2Ta.23887.1.S1_s_atAt3g04970--7e-4At3g58990aconitase C-terminal domain-containing proteinO.I.H.G.S.X.
0.2532.1Ta.27257.1.S1_atAt3g04970--3e+0At5g06320NHL3O.I.H.G.S.X.
0.2532.1TaAffx.107562.1.S1_s_atAt3g04970--7e-1At5g27495ion channel inhibitorO.I.H.G.S.X.
0.2329.0Ta.8525.2.S1_a_atAt3g04970--1e+0At3g57840self-incompatibility protein-relatedO.I.H.G.S.X.
0.2329.0TaAffx.20511.1.S1_atAt3g04970--7e-11At1g03000PEX6 (PEROXIN 6)O.I.H.G.S.X.
0.2125.5Ta.8098.2.S1_atAt3g04970--6e+0At3g14200DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.1719.8Ta.8158.1.A1_atAt3g04970--4e-1At5g04120phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.1415.8Ta.4798.1.S1_atAt3g04970Vacuolar proton ATPase subunit H-2e-8At3g42050vacuolar ATP synthase subunit H family proteinO.I.H.G.S.X.
0.1314.6Ta.9192.1.S1_atAt3g04970--3e-3At1g63770peptidase M1 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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